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nuclear receptor coactivator [ Arabidopsis thaliana (thale cress) ]

Gene ID: 843571, updated on 18-Sep-2024

Summary

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Official Full Name
nuclear receptor coactivator
Primary source
TAIR:AT1G72390
Locus tag
AT1G72390
See related
Araport:AT1G72390
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
PHL; PHYTOCHROME-DEPENDENT LATE-FLOWERING; T10D10.14; T10D10_14
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Genomic context

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Location:
chromosome: 1
Exon count:
13
Sequence:
Chromosome: 1; NC_003070.9 (27245082..27251672)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene MADS-box transcription factor family protein Neighboring gene Integrase-type DNA-binding superfamily protein Neighboring gene 40s ribosomal protein SA Neighboring gene COP1-interacting protein-like protein Neighboring gene Chaperone DnaJ-domain superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Light-dependent destabilization of PHL in Arabidopsis. Endo M, et al. Plant Signal Behav, 2014. PMID 24614229, Free PMC Article
  2. PHYTOCHROME-DEPENDENT LATE-FLOWERING accelerates flowering through physical interactions with phytochrome B and CONSTANS. Endo M, et al. Proc Natl Acad Sci U S A, 2013 Oct 29. PMID 24127609, Free PMC Article
  3. Proximity labeling of protein complexes and cell-type-specific organellar proteomes in Arabidopsis enabled by TurboID. Mair A, et al. Elife, 2019 Sep 19. PMID 31535972, Free PMC Article
  4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. destabilized by light exposure
    Title: Light-dependent destabilization of PHL in Arabidopsis.
  2. PHYTOCHROME-DEPENDENT LATE-FLOWERING accelerates flowering through physical interactions with phytochrome B and CONSTANS. [PHL]
    Title: PHYTOCHROME-DEPENDENT LATE-FLOWERING accelerates flowering through physical interactions with phytochrome B and CONSTANS.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

  • At1g72390_Arabidopsis_lyrata_ssp._lyrata_CAN1 (e-PCR)
  • At1g72390_Arabidopsis_lyrata_ssp._petraea_GER1 (e-PCR)
NM_001334526.1
NM_105898.7

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables transcription coregulator activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in circadian rhythm IEP
Inferred from Expression Pattern
more info
 PubMed 
involved_in long-day photoperiodism, flowering IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in regulation of timing of transition from vegetative to reproductive phase IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in response to light stimulus IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
part_of SAGA complex IEA
Inferred from Electronic Annotation
more info
  
located_in cytoplasm IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nuclear body IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plasma membrane ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
nuclear receptor coactivator
NP_177383.5
  • CONTAINS InterPro DOMAIN/s: Spt20 family (InterPro:IPR021950); Has 8778 Blast hits to 7244 proteins in 477 species: Archae - 6; Bacteria - 326; Metazoa - 4198; Fungi - 1506; Plants - 923; Viruses - 22; Other Eukaryotes - 1797 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    27245082..27251672
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_105898.7 → NP_177383.5  nuclear receptor coactivator [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_177383.5

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4IDB2, Q9C9D6, Q9C9D7
    UniProtKB/TrEMBL
    A0A178WED1, A0A654ETG6
    Conserved Domains (1) summary
    pfam12090
    Location:62 → 202
    Spt20; Spt20 family

  2. NM_001334526.1 → NP_001321648.1  nuclear receptor coactivator [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4IDB2, Q9C9D6, Q9C9D7
    UniProtKB/TrEMBL
    A0A178WED1, A0A654ETG6
    Conserved Domains (1) summary
    pfam12090
    Location:62 → 202
    Spt20; Spt20 family
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
F4IDB2.1

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