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nucleolar pre-ribosomal-associated protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 843559, updated on 15-Jan-2025

Summary

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Official Full Name
nucleolar pre-ribosomal-associated protein
Primary source
TAIR:AT1G72270
Locus tag
AT1G72270
See related
Araport:AT1G72270
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T9N14.23; T9N14_23
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Genomic context

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Location:
chromosome: 1
Exon count:
16
Sequence:
Chromosome: 1; NC_003070.9 (27199623..27209096, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Di-glucose binding protein with Kinesin motor domain-containing protein Neighboring gene thionin 2.1 Neighboring gene LOW protein: nuclease-like protein Neighboring gene endoplasmic reticulum oxidoreductins 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A pair of transposon-derived proteins function in a histone acetyltransferase complex for active DNA demethylation. Duan CG, et al. Cell Res, 2017 Feb. PMID 27934869, Free PMC Article
  2. Regulation of Active DNA Demethylation by a Methyl-CpG-Binding Domain Protein in Arabidopsis thaliana. Li Q, et al. PLoS Genet, 2015 May. PMID 25933434, Free PMC Article
  3. Experimental analysis of the Arabidopsis mitochondrial proteome highlights signaling and regulatory components, provides assessment of targeting prediction programs, and indicates plant-specific mitochondrial proteins. Heazlewood JL, et al. Plant Cell, 2004 Jan. PMID 14671022, Free PMC Article
  4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712
  5. Retraction: 'A pair of transposon-derived proteins regulate active DNA demethylation in Arabidopsis'. Li Q, et al. EMBO J, 2016 Sep 15. PMID 27470001, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_105886.6

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Component Evidence Code Pubs
part_of histone acetyltransferase complex IDA
Inferred from Direct Assay
more info
 PubMed 
located_in mitochondrion HDA PubMed 
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
nucleolar pre-ribosomal-associated protein
NP_565039.5
  • CONTAINS InterPro DOMAIN/s: Ribosome 60S biogenesis N-terminal (InterPro:IPR021714); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G27010.1); Has 772 Blast hits to 657 proteins in 120 species: Archae - 0; Bacteria - 0; Metazoa - 344; Fungi - 94; Plants - 322; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    27199623..27209096 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_105886.6 → NP_565039.5  nucleolar pre-ribosomal-associated protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654EPZ2, F4IBR2
Nucleotide Protein
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