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Ubiquitin carboxyl-terminal hydrolase family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 843515, updated on 18-Sep-2024

Summary

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Official Full Name
Ubiquitin carboxyl-terminal hydrolase family protein
Primary source
TAIR:AT1G71850
Locus tag
AT1G71850
See related
Araport:AT1G71850
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F14O23.23; F14O23_23
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Genomic context

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Location:
chromosome: 1
Exon count:
1
Sequence:
Chromosome: 1; NC_003070.9 (27024731..27026363, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene somatic embryogenesis receptor-like kinase 1 Neighboring gene transducin family protein / WD-40 repeat family protein Neighboring gene protein tyrosine phosphatase 1 Neighboring gene PyrD Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A low-temperature-responsive element involved in the regulation of the Arabidopsis thaliana At1g71850/At1g71860 divergent gene pair. Liu S, et al. Plant Cell Rep, 2016 Aug. PMID 27215439
  2. In-depth temporal transcriptome profiling reveals a crucial developmental switch with roles for RNA processing and organelle metabolism that are essential for germination in Arabidopsis. Narsai R, et al. Plant Physiol, 2011 Nov. PMID 21908688, Free PMC Article
  3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. the regulation of the Arabidopsis thaliana gene pair At1g71850/At1g71860 was investigated.
    Title: A low-temperature-responsive element involved in the regulation of the Arabidopsis thaliana At1g71850/At1g71860 divergent gene pair.
Submit: New GeneRIF Correction

General gene information

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NM_105843.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in mitochondrion HDA PubMed 

General protein information

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Preferred Names
Ubiquitin carboxyl-terminal hydrolase family protein
NP_177330.1
  • Ubiquitin carboxyl-terminal hydrolase family protein; CONTAINS InterPro DOMAIN/s: RNA recognition domain, plant (InterPro:IPR021099); BEST Arabidopsis thaliana protein match is: Ubiquitin carboxyl-terminal hydrolase family protein (TAIR:AT4G24320.1); Has 758 Blast hits to 736 proteins in 101 species: Archae - 0; Bacteria - 6; Metazoa - 59; Fungi - 84; Plants - 429; Viruses - 8; Other Eukaryotes - 172 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    27024731..27026363 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_105843.3 → NP_177330.1  Ubiquitin carboxyl-terminal hydrolase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_177330.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9WRJ1, A0A654ENH9, Q9M9G1
    Conserved Domains (1) summary
    pfam11955
    Location:32 → 364
    PORR; Plant organelle RNA recognition domain
Nucleotide Protein
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