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SOL1 carboxypeptidase D [ Arabidopsis thaliana (thale cress) ]

Gene ID: 843499, updated on 18-Sep-2024

Summary

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Official Symbol
SOL1
Official Full Name
carboxypeptidase D
Primary source
TAIR:AT1G71696
Locus tag
AT1G71696
See related
Araport:AT1G71696
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F14O23.7; F14O23_7; SUPPRESSOR OF LLP1 1
Summary
Encodes a Putative Zn2+ carboxypeptidase, 4 splice variants have been identified but not characterized for different functions and/or expression patterns.SOL1 isolated as a suppressor of root- specific overexpression of CLE19, a clavata3 like gene. sol1 partially suppresses the short root phenotype caused by CLE19 overexpression.
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Genomic context

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See SOL1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
14
Sequence:
Chromosome: 1; NC_003070.9 (26966766..26970603)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene AGAMOUS-like 12 Neighboring gene Peroxidase superfamily protein Neighboring gene choline kinase 1 Neighboring gene tRNA-Gly Neighboring gene DNAse I-like superfamily protein Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. SUPPRESSOR OF LLP1 1-mediated C-terminal processing is critical for CLE19 peptide activity. Tamaki T, et al. Plant J, 2013 Dec. PMID 24118638
  2. Root-specific CLE19 overexpression and the sol1/2 suppressors implicate a CLV-like pathway in the control of Arabidopsis root meristem maintenance. Casamitjana-Martínez E, et al. Curr Biol, 2003 Aug 19. PMID 12932329
  3. SOL1 and SOL2 regulate fate transition and cell divisions in the Arabidopsis stomatal lineage. Simmons AR, et al. Development, 2019 Feb 4. PMID 30665887, Free PMC Article
  4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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Markers

NM_105827.3
NM_202397.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables metallocarboxypeptidase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables metallocarboxypeptidase activity IEA
Inferred from Electronic Annotation
more info
  
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within regulation of root meristem growth IGI
Inferred from Genetic Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in endosome membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
carboxypeptidase D
NP_177314.2
  • SUPPRESSOR OF LLP1 1 (SOL1); FUNCTIONS IN: metallocarboxypeptidase activity, carboxypeptidase activity, zinc ion binding; INVOLVED IN: regulation of root meristem growth; LOCATED IN: endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Carboxypeptidase-like, regulatory domain (InterPro:IPR008969), Peptidase M14, carboxypeptidase A (InterPro:IPR000834), Carboxypeptidase, regulatory domain (InterPro:IPR014766); Has 2124 Blast hits to 1909 proteins in 351 species: Archae - 6; Bacteria - 563; Metazoa - 1124; Fungi - 40; Plants - 76; Viruses - 0; Other Eukaryotes - 315 (source: NCBI BLink).
NP_974126.1
  • SUPPRESSOR OF LLP1 1 (SOL1); FUNCTIONS IN: metallocarboxypeptidase activity, carboxypeptidase activity, zinc ion binding; INVOLVED IN: regulation of root meristem growth; LOCATED IN: endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Carboxypeptidase-like, regulatory domain (InterPro:IPR008969), Peptidase M14, carboxypeptidase A (InterPro:IPR000834), Carboxypeptidase, regulatory domain (InterPro:IPR014766); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    26966766..26970603
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_105827.3 → NP_177314.2  carboxypeptidase D [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_177314.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W5I6, F4IA17
    Conserved Domains (2) summary
    cd11308
    Location:273 → 348
    Peptidase_M14NE-CP-C_like; Peptidase associated domain: C-terminal domain of M14 N/E carboxypeptidase; putative folding, regulation, or interaction domain
    cd18172
    Location:18 → 268
    M14_CP_plant; Zinc carboxypeptidase, including SOL1, a carboxypeptidase D in plant

  2. NM_202397.2 → NP_974126.1  carboxypeptidase D [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_974126.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9C9J2, Q9M9H7
    UniProtKB/TrEMBL
    A0A178W7I3, A0A654EPP8
    Conserved Domains (2) summary
    cd11308
    Location:342 → 417
    Peptidase_M14NE-CP-C_like; Peptidase associated domain: C-terminal domain of M14 N/E carboxypeptidase; putative folding, regulation, or interaction domain
    cd18172
    Location:65 → 337
    M14_CP_plant; Zinc carboxypeptidase, including SOL1, a carboxypeptidase D in plant
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9M9H7.1

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