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ARM repeat superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 843482, updated on 18-Sep-2024

Summary

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Official Full Name
ARM repeat superfamily protein
Primary source
TAIR:AT1G71410
Locus tag
AT1G71410
See related
Araport:AT1G71410
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F3I17.28; F3I17_28
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Genomic context

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Location:
chromosome: 1
Exon count:
15
Sequence:
Chromosome: 1; NC_003070.9 (26912726..26917732, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene receptor like protein 11 Neighboring gene receptor like protein 12 Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene ncRNA Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. SCYL2 Genes Are Involved in Clathrin-Mediated Vesicle Trafficking and Essential for Plant Growth. Jung JY, et al. Plant Physiol, 2017 Sep. PMID 28751315, Free PMC Article
  2. Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase. Van Leene J, et al. Nat Plants, 2019 Mar. PMID 30833711
  3. Analysis of the Arabidopsis cytosolic proteome highlights subcellular partitioning of central plant metabolism. Ito J, et al. J Proteome Res, 2011 Apr 1. PMID 21166475
  4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_105810.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables clathrin heavy chain binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables protein kinase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in root hair cell development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
colocalizes_with Golgi apparatus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in Golgi membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
NOT located_in cytosol RCA
inferred from Reviewed Computational Analysis
more info
 PubMed 
colocalizes_with late endosome IDA
Inferred from Direct Assay
more info
 PubMed 
located_in late endosome membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in root hair tip IDA
Inferred from Direct Assay
more info
 PubMed 
colocalizes_with trans-Golgi network IDA
Inferred from Direct Assay
more info
 PubMed 
located_in trans-Golgi network membrane IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
ARM repeat superfamily protein
NP_177297.1
  • ARM repeat superfamily protein; FUNCTIONS IN: binding, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Armadillo-type fold (InterPro:IPR016024), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase family protein with ARM repeat domain (TAIR:AT1G22870.1); Has 32123 Blast hits to 30004 proteins in 1636 species: Archae - 12; Bacteria - 4500; Metazoa - 10601; Fungi - 4600; Plants - 4657; Viruses - 36; Other Eukaryotes - 7717 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    26912726..26917732 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001334498.1 → NP_001322749.1  ARM repeat superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q0WM08, Q9C9H8
    UniProtKB/TrEMBL
    A0A654EPR1

  2. NM_105810.4 → NP_177297.1  ARM repeat superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_177297.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q0WM08, Q9C9H8
    UniProtKB/TrEMBL
    A0A654EPR1
    Conserved Domains (3) summary
    cd14011
    Location:45 → 345
    PK_SCY1_like; Pseudokinase domain of Scy1-like proteins
    pfam00069
    Location:39 → 334
    Pkinase; Protein kinase domain
    sd00044
    Location:427 → 453
    HEAT; HEAT repeat [structural motif]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9C9H8.1

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