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CEL3 cellulase 3 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 843479, updated on 18-Sep-2024

Summary

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Official Symbol
CEL3
Official Full Name
cellulase 3
Primary source
TAIR:AT1G71380
Locus tag
AT1G71380
See related
Araport:AT1G71380
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B3; ATCEL3; ATGH9B3; cellulase 3; F3I17.16; F3I17_16
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Genomic context

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See CEL3 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
5
Sequence:
Chromosome: 1; NC_003070.9 (26899765..26901976, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene DEA(D/H)-box RNA helicase family protein Neighboring gene ncRNA Neighboring gene receptor like protein 11

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A kinetic analysis of the auxin transcriptome reveals cell wall remodeling proteins that modulate lateral root development in Arabidopsis. Lewis DR, et al. Plant Cell, 2013 Sep. PMID 24045021, Free PMC Article
  2. Differential extraction and protein sequencing reveals major differences in patterns of primary cell wall proteins from plants. Robertson D, et al. J Biol Chem, 1997 Jun 20. PMID 9188482
  3. Arabidopsis thaliana MSI4/FVE associates with members of a novel family of plant specific PWWP/RRM domain proteins. Kenzior A, et al. Plant Mol Biol, 2015 Mar. PMID 25600937
  4. Proteomics of loosely bound cell wall proteins of Arabidopsis thaliana cell suspension cultures: a critical analysis. Borderies G, et al. Electrophoresis, 2003 Oct. PMID 14595688
  5. Arabidopsis cell wall proteome defined using multidimensional protein identification technology. Bayer EM, et al. Proteomics, 2006 Jan. PMID 16287169

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Mutations in CELLULASE3/GLYCOSYLHYDROLASE9B3 (CEL3/GH9B3) and LEUCINE RICH REPEAT EXTENSIN (LRX2) have altered initiation and emergence of lateral roots, respectively.
    Title: A kinetic analysis of the auxin transcriptome reveals cell wall remodeling proteins that modulate lateral root development in Arabidopsis.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_105807.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables cellulase activity IEA
Inferred from Electronic Annotation
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus HDA PubMed 
NOT located_in cytosol RCA
inferred from Reviewed Computational Analysis
more info
 PubMed 
located_in extracellular region ISM
Inferred from Sequence Model
more info
  
located_in plant-type cell wall HDA PubMed 
located_in plant-type cell wall IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plasmodesma HDA PubMed 

General protein information

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Preferred Names
cellulase 3
NP_177294.1
  • cellulase 3 (CEL3); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cell wall, plasma membrane, plant-type cell wall; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Glycoside hydrolase, family 9 (InterPro:IPR001701); BEST Arabidopsis thaliana protein match is: cellulase 5 (TAIR:AT1G22880.1); Has 1752 Blast hits to 1741 proteins in 250 species: Archae - 2; Bacteria - 607; Metazoa - 172; Fungi - 17; Plants - 917; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    26899765..26901976 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_105807.2 → NP_177294.1  cellulase 3 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_177294.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P80855, Q38817, Q8LDE8, Q9C9H5
    UniProtKB/TrEMBL
    A0A654EPN2, Q0V7W1
    Conserved Domains (1) summary
    PLN02175
    Location:1 → 484
    PLN02175; endoglucanase
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9C9H5.1

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