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RNA polymerase II transcription elongation factor [ Arabidopsis thaliana (thale cress) ]

Gene ID: 843448, updated on 18-Sep-2024

Summary

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Official Full Name
RNA polymerase II transcription elongation factor
Primary source
TAIR:AT1G71080
Locus tag
AT1G71080
See related
Araport:AT1G71080
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F23N20.7; F23N20_7
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Genomic context

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Location:
chromosome: 1
Exon count:
4
Sequence:
Chromosome: 1; NC_003070.9 (26809720..26811848, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein Neighboring gene Auxin efflux carrier family protein Neighboring gene Ribose 5-phosphate isomerase, type A protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Arabidopsis thaliana possesses two novel ELL associated factor homologs. Dabas P, et al. IUBMB Life, 2021 Sep. PMID 34089218
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Arabidopsis thaliana possesses two novel ELL associated factor homologs.
    Title: Arabidopsis thaliana possesses two novel ELL associated factor homologs.
Submit: New GeneRIF Correction

General gene information

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Homology

NM_105777.4

Gene Ontology Provided by TAIR

Process Evidence Code Pubs
involved_in transcription elongation by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  
part_of super elongation complex IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
RNA polymerase II transcription elongation factor
NP_565010.1
  • RNA polymerase II transcription elongation factor; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Eaf, ELL-associated factor (InterPro:IPR019194); BEST Arabidopsis thaliana protein match is: RNA polymerase II transcription elongation factor (TAIR:AT5G38050.1); Has 12853 Blast hits to 3725 proteins in 482 species: Archae - 50; Bacteria - 7340; Metazoa - 2093; Fungi - 1002; Plants - 180; Viruses - 45; Other Eukaryotes - 2143 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    26809720..26811848 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_105777.4 → NP_565010.1  RNA polymerase II transcription elongation factor [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_565010.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WMK6, Q9C9A0
    Conserved Domains (1) summary
    pfam09816
    Location:19 → 118
    EAF; RNA polymerase II transcription elongation factor
Nucleotide Protein
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