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Calcium-dependent lipid-binding (CaLB domain) family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 843416, updated on 18-Sep-2024

Summary

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Official Full Name
Calcium-dependent lipid-binding (CaLB domain) family protein
Primary source
TAIR:AT1G70790
Locus tag
AT1G70790
See related
Araport:AT1G70790
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F15H11.4; F15H11_4
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Genomic context

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Location:
chromosome: 1
Exon count:
7
Sequence:
Chromosome: 1; NC_003070.9 (26699321..26702544)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene Calcium-dependent lipid-binding (CaLB domain) family protein Neighboring gene Calcium-dependent lipid-binding (CaLB domain) family protein Neighboring gene phosphoglucomutase, putative / glucose phosphomutase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. LOWER TEMPERATURE 1 Enhances ABA Responses and Plant Drought Tolerance by Modulating the Stability and Localization of C2-Domain ABA-Related Proteins in Arabidopsis. Qin T, et al. Mol Plant, 2019 Sep 2. PMID 31102784
  2. CAR modulates plasma membrane nano-organization and immune signaling downstream of RALF1-FERONIA signaling pathway. Chen W, et al. New Phytol, 2023 Mar. PMID 36527240
  3. C2-domain abscisic acid-related proteins mediate the interaction of PYR/PYL/RCAR abscisic acid receptors with the plasma membrane and regulate abscisic acid sensitivity in Arabidopsis. Rodriguez L, et al. Plant Cell, 2014 Dec. PMID 25465408, Free PMC Article
  4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_001334479.1
NM_001334480.1
NM_105747.3
NM_179543.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables GTPase activator activity ISS
Inferred from Sequence or Structural Similarity
more info
  
enables phospholipid binding ISS
Inferred from Sequence or Structural Similarity
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of GTPase activity ISS
Inferred from Sequence or Structural Similarity
more info
  
involved_in positive regulation of abscisic acid-activated signaling pathway IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in response to abscisic acid IEP
Inferred from Expression Pattern
more info
 PubMed 
involved_in response to abscisic acid IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISS
Inferred from Sequence or Structural Similarity
more info
  
located_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plasma membrane ISS
Inferred from Sequence or Structural Similarity
more info
  

General protein information

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Preferred Names
Calcium-dependent lipid-binding (CaLB domain) family protein
NP_001319362.1
  • Calcium-dependent lipid-binding (CaLB domain) family protein; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT2G01540.1); Has 4172 Blast hits to 3576 proteins in 253 species: Archae - 0; Bacteria - 0; Metazoa - 2406; Fungi - 526; Plants - 879; Viruses - 0; Other Eukaryotes - 361 (source: NCBI BLink).
NP_565001.1
  • Calcium-dependent lipid-binding (CaLB domain) family protein; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT2G01540.1); Has 4172 Blast hits to 3576 proteins in 253 species: Archae - 0; Bacteria - 0; Metazoa - 2406; Fungi - 526; Plants - 879; Viruses - 0; Other Eukaryotes - 361 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    26699321..26702544
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001334479.1 → NP_001319362.1  Calcium-dependent lipid-binding (CaLB domain) family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9S7J9
    UniProtKB/TrEMBL
    A0A178W9M2, A0A5S9WRL3
    Conserved Domains (1) summary
    cd04038
    Location:6 → 151
    C2_ArfGAP; C2 domain present in Arf GTPase Activating Proteins (GAP)

  2. NM_179543.3 → NP_849874.1  Calcium-dependent lipid-binding (CaLB domain) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_849874.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9S7J9
    UniProtKB/TrEMBL
    A0A178W9M2, A0A5S9WRL3
    Conserved Domains (1) summary
    cd04038
    Location:6 → 151
    C2_ArfGAP; C2 domain present in Arf GTPase Activating Proteins (GAP)

  3. NM_105747.3 → NP_565001.1  Calcium-dependent lipid-binding (CaLB domain) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_565001.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9S7J9
    UniProtKB/TrEMBL
    A0A178W9M2, A0A5S9WRL3
    Conserved Domains (1) summary
    cd04038
    Location:6 → 151
    C2_ArfGAP; C2 domain present in Arf GTPase Activating Proteins (GAP)

  4. NM_001334480.1 → NP_001323065.1  Calcium-dependent lipid-binding (CaLB domain) family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AW00
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9S7J9.1

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