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cyclin-like protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 843399, updated on 18-Sep-2024

Summary

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Official Full Name
cyclin-like protein
Primary source
TAIR:AT1G70620
Locus tag
AT1G70620
See related
Araport:AT1G70620
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F5A18.20; F5A18_20
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Genomic context

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Location:
chromosome: 1
Exon count:
11
Sequence:
Chromosome: 1; NC_003070.9 (26626528..26631104)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Ribosomal protein L18e/L15 superfamily protein Neighboring gene transporter associated with antigen processing protein 1 Neighboring gene Nucleotide-diphospho-sugar transferase family protein Neighboring gene octicosapeptide/Phox/Bem1p (PB1) domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_001334469.1
NM_105730.3
NM_179542.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
cyclin-like protein
NP_001185363.1
  • cyclin-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages.
NP_177219.2
  • cyclin-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; Has 112611 Blast hits to 60905 proteins in 2332 species: Archae - 119; Bacteria - 12075; Metazoa - 52298; Fungi - 16219; Plants - 10822; Viruses - 1423; Other Eukaryotes - 19655 (source: NCBI BLink).
NP_849873.1
  • cyclin-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; Has 95268 Blast hits to 52287 proteins in 2120 species: Archae - 101; Bacteria - 11250; Metazoa - 43040; Fungi - 13274; Plants - 9970; Viruses - 1254; Other Eukaryotes - 16379 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    26626528..26631104
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001334464.1 → NP_001320367.1  cyclin-like protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WIT3, A0A1P8AMN8

  2. NM_001334465.1 → NP_001320366.1  cyclin-like protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WIT3, A0A1P8AMN8

  3. NM_001334466.1 → NP_001320363.1  cyclin-like protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WKI2, A0A1P8AMK7

  4. NM_001198434.1 → NP_001185363.1  cyclin-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001185363.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9WT50, F4I6U7
    Conserved Domains (1) summary
    pfam03153
    Location:77 → 265
    TFIIA; Transcription factor IIA, alpha/beta subunit

  5. NM_001334468.1 → NP_001320368.1  cyclin-like protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WKI2, A0A1P8AML1

  6. NM_001334467.1 → NP_001320365.1  cyclin-like protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WJL9, A0A1P8AMN9

  7. NM_105730.3 → NP_177219.2  cyclin-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_177219.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WH35, F4I6U8
    Conserved Domains (2) summary
    pfam03153
    Location:77 → 265
    TFIIA; Transcription factor IIA, alpha/beta subunit
    pfam15996
    Location:414 → 530
    PNISR; Arginine/serine-rich protein PNISR

  8. NM_179542.2 → NP_849873.1  cyclin-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_849873.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WH35, Q9CAB4
    Conserved Domains (2) summary
    PRK10263
    Location:89 → 253
    PRK10263; DNA translocase FtsK; Provisional
    pfam15996
    Location:427 → 504
    PNISR; Arginine/serine-rich protein PNISR

  9. NM_001334469.1 → NP_001320364.1  cyclin-like protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WH35, A0A1P8AMK4
Nucleotide Protein
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