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SNL4 SIN3-like 4 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 843342, updated on 18-Sep-2024

Summary

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Official Symbol
SNL4
Official Full Name
SIN3-like 4
Primary source
TAIR:AT1G70060
Locus tag
AT1G70060
See related
Araport:AT1G70060
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F20P5.21; F20P5_21; SIN3-like 4
Summary
Encodes a homolog of the transcriptional repressor SIN3 (AT1G24190).
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Genomic context

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See SNL4 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
22
Sequence:
Chromosome: 1; NC_003070.9 (26383216..26389916)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene tRNA-Pro Neighboring gene ncRNA Neighboring gene DEAD/DEAH box helicase Neighboring gene Terpenoid cyclases/Protein prenyltransferases superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_001334433.1
NM_105674.6

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables transcription corepressor activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
SIN3-like 4
NP_177163.3
  • SIN3-like 4 (SNL4); INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone deacetylase interacting (InterPro:IPR013194), Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: SIN3-like 3 (TAIR:AT1G24190.2); Has 2571 Blast hits to 1108 proteins in 232 species: Archae - 4; Bacteria - 56; Metazoa - 1028; Fungi - 808; Plants - 415; Viruses - 14; Other Eukaryotes - 246 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    26383216..26389916
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_105674.6 → NP_177163.3  SIN3-like 4 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_177163.3

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4I3W8, O04539
    UniProtKB/TrEMBL
    A0A5S9WT14
    Conserved Domains (4) summary
    COG5602
    Location:4 → 803
    Sin3; Histone deacetylase complex, regulatory component SIN3 [Chromatin structure and dynamics]
    pfam02671
    Location:31 → 75
    PAH; Paired amphipathic helix repeat
    pfam08295
    Location:442 → 533
    Sin3_corepress; Sin3 family co-repressor
    pfam16879
    Location:1039 → 1284
    Sin3a_C; C-terminal domain of Sin3a protein

  2. NM_001334433.1 → NP_001323064.1  SIN3-like 4 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4I3W8, O04539
    UniProtKB/TrEMBL
    A0A5S9WT14
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O04539.3

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