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HVA22C HVA22 homologue C [ Arabidopsis thaliana (thale cress) ]

Gene ID: 843306, updated on 18-Sep-2024

Summary

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Official Symbol
HVA22C
Official Full Name
HVA22 homologue C
Primary source
TAIR:AT1G69700
Locus tag
AT1G69700
See related
Araport:AT1G69700
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATHVA22C; HVA22 homologue C; T6C23.10; T6C23_10
Summary
Part of the AtHVA22 family. Protein expression is ABA- and stress-inducible.
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Genomic context

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See HVA22C in Genome Data Viewer
Location:
chromosome: 1
Exon count:
5
Sequence:
Chromosome: 1; NC_003070.9 (26220190..26221870)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene ncRNA Neighboring gene TCP family transcription factor Neighboring gene Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein Neighboring gene Wall-associated kinase family protein Neighboring gene heme oxygenase 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. AtHVA22 gene family in Arabidopsis: phylogenetic relationship, ABA and stress regulation, and tissue-specific expression. Chen CN, et al. Plant Mol Biol, 2002 Aug. PMID 12081371
  2. Arabidopsis plasmodesmal proteome. Fernandez-Calvino L, et al. PLoS One, 2011 Apr 20. PMID 21533090, Free PMC Article
  3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_105638.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within hyperosmotic salinity response IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_or_within response to abscisic acid IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_or_within response to water deprivation IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  
located_in plasmodesma HDA PubMed 

General protein information

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Preferred Names
HVA22 homologue C
NP_177128.1
  • HVA22 homologue C (HVA22C); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to water deprivation, hyperosmotic salinity response, response to abscisic acid stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TB2/DP1/HVA22 related protein (InterPro:IPR004345); BEST Arabidopsis thaliana protein match is: HVA22 homologue A (TAIR:AT1G74520.1); Has 1462 Blast hits to 1462 proteins in 206 species: Archae - 0; Bacteria - 0; Metazoa - 635; Fungi - 218; Plants - 519; Viruses - 0; Other Eukaryotes - 90 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    26220190..26221870
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_105638.4 → NP_177128.1  HVA22 homologue C [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_177128.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9S784
    UniProtKB/TrEMBL
    A0A178W1K5, A0A5S9WQX9, A0A654ESQ0
    Conserved Domains (1) summary
    pfam03134
    Location:31 → 107
    TB2_DP1_HVA22; TB2/DP1, HVA22 family
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9S784.1

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