U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

appr-1-p processing enzyme family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 843266, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Full Name
appr-1-p processing enzyme family protein
Primary source
TAIR:AT1G69340
Locus tag
AT1G69340
See related
Araport:AT1G69340
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F10D13.28; F10D13_28
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 1
Exon count:
15
Sequence:
Chromosome: 1; NC_003070.9 (26065698..26069843)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene CLAVATA3/ESR-RELATED 10 Neighboring gene Remorin family protein Neighboring gene RING/U-box superfamily protein Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene T-box transcription factor, putative (DUF863)

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  2. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
  3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help

Homology

NM_001334408.1
NM_105601.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
located_in mitochondrion HDA PubMed 

General protein information

Go to the top of the page Help
Preferred Names
appr-1-p processing enzyme family protein
NP_564960.1
  • appr-1-p processing enzyme family protein; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Appr-1-p processing (InterPro:IPR002589); BEST Arabidopsis thaliana protein match is: appr-1-p processing enzyme family protein (TAIR:AT2G40600.1); Has 3597 Blast hits to 3538 proteins in 1210 species: Archae - 64; Bacteria - 1971; Metazoa - 984; Fungi - 140; Plants - 224; Viruses - 8; Other Eukaryotes - 206 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    26065698..26069843
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_105601.4 → NP_564960.1  appr-1-p processing enzyme family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_564960.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WBP6, A0A384KYZ5, Q94JV1, Q9C796
    Conserved Domains (2) summary
    cd02905
    Location:85 → 253
    Macro_GDAP2-like; macrodomain, GDAP2-like family
    pfam13716
    Location:409 → 542
    CRAL_TRIO_2; Divergent CRAL/TRIO domain

  2. NM_001334408.1 → NP_001323191.1  appr-1-p processing enzyme family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WBP6, A0A384KYZ5, Q94JV1, Q9C796
    Conserved Domains (2) summary
    cd02905
    Location:85 → 253
    Macro_GDAP2-like; macrodomain, GDAP2-like family
    pfam13716
    Location:409 → 542
    CRAL_TRIO_2; Divergent CRAL/TRIO domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools