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Uncharacterized protein family UPF0090 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 843252, updated on 18-Sep-2024

Summary

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Official Full Name
Uncharacterized protein family UPF0090
Primary source
TAIR:AT1G69210
Locus tag
AT1G69210
See related
Araport:AT1G69210
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F4N2.17; F4N2_17
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Genomic context

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Location:
chromosome: 1
Exon count:
5
Sequence:
Chromosome: 1; NC_003070.9 (26018438..26020058, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Dihydropterin pyrophosphokinase / Dihydropteroate synthase Neighboring gene fructokinase-like protein Neighboring gene Protein kinase superfamily protein Neighboring gene SPIRAL1-like2 Neighboring gene methyl esterase 15

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_001124100.1
NM_105588.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in ribosomal small subunit biogenesis IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Uncharacterized protein family UPF0090
NP_001117572.1
  • Uncharacterised protein family UPF0090; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0090 (InterPro:IPR003728); BEST Arabidopsis thaliana protein match is: Uncharacterised protein family UPF0090 (TAIR:AT1G77122.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
NP_564954.1
  • Uncharacterised protein family UPF0090; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0090 (InterPro:IPR003728); BEST Arabidopsis thaliana protein match is: Uncharacterised protein family UPF0090 (TAIR:AT1G77122.1); Has 169 Blast hits to 169 proteins in 64 species: Archae - 0; Bacteria - 102; Metazoa - 0; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    26018438..26020058 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_105588.3 → NP_564954.1  Uncharacterized protein family UPF0090 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_564954.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W528, A0A654EMD0, Q94JV0
    Conserved Domains (1) summary
    cl00259
    Location:147 → 305
    Sm_like; Sm and related proteins

  2. NM_001124100.1 → NP_001117572.1  Uncharacterized protein family UPF0090 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001117572.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    B3H552
Nucleotide Protein
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