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Agenet and bromo-adjacent homology (BAH) domain-containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 843187, updated on 18-Sep-2024

Summary

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Official Full Name
Agenet and bromo-adjacent homology (BAH) domain-containing protein
Primary source
TAIR:AT1G68580
Locus tag
AT1G68580
See related
Araport:AT1G68580
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F24J5.18; F24J5_18
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Genomic context

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Location:
chromosome: 1
Exon count:
7
Sequence:
Chromosome: 1; NC_003070.9 (25752624..25756113)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Major facilitator superfamily protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene Ribosomal protein PSRP-3/Ycf65 Neighboring gene aluminum activated malate transporter family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Arabidopsis plasmodesmal proteome. Fernandez-Calvino L, et al. PLoS One, 2011 Apr 20. PMID 21533090, Free PMC Article
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_001334369.1
NM_001334372.1
NM_105529.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables chromatin binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  
located_in plasmodesma HDA PubMed 

General protein information

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Preferred Names
Agenet and bromo-adjacent homology (BAH) domain-containing protein
NP_001319349.1
  • agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein; FUNCTIONS IN: RNA binding, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tudor-like, plant (InterPro:IPR014002), Agenet (InterPro:IPR008395), Bromo adjacent homology (BAH) domain (InterPro:IPR001025); BEST Arabidopsis thaliana protein match is: agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein (TAIR:AT5G55600.3); Has 202 Blast hits to 186 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 195; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
NP_177025.2
  • agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein; FUNCTIONS IN: RNA binding, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tudor-like, plant (InterPro:IPR014002), Agenet (InterPro:IPR008395), Bromo adjacent homology (BAH) domain (InterPro:IPR001025); BEST Arabidopsis thaliana protein match is: agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein (TAIR:AT5G55600.3); Has 284 Blast hits to 251 proteins in 24 species: Archae - 0; Bacteria - 2; Metazoa - 4; Fungi - 0; Plants - 275; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    25752624..25756113
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001334370.1 → NP_001321496.1  Agenet and bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AR30, A0A5S9WSZ6
    Conserved Domains (3) summary
    cd04721
    Location:48 → 175
    BAH_plant_1; BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these ...
    cd20403
    Location:359 → 404
    Tudor_Agenet_FMRP-like_rpt2; second Tudor-like Agenet domain found in the fragile X mental retardation protein (FMRP) family
    cd20405
    Location:267 → 325
    Tudor_Agenet_AtDUF_rpt1_3; first and third Tudor-like Agenet domains found in a family of Arabidopsis thaliana DUF724 domain-containing proteins (AtDUFs)

  2. NM_001334371.1 → NP_001321498.1  Agenet and bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AR80, A0A7G2E489
    Conserved Domains (3) summary
    cd04721
    Location:144 → 271
    BAH_plant_1; BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these ...
    cd20403
    Location:455 → 500
    Tudor_Agenet_FMRP-like_rpt2; second Tudor-like Agenet domain found in the fragile X mental retardation protein (FMRP) family
    cd20405
    Location:363 → 421
    Tudor_Agenet_AtDUF_rpt1_3; first and third Tudor-like Agenet domains found in a family of Arabidopsis thaliana DUF724 domain-containing proteins (AtDUFs)

  3. NM_105529.4 → NP_177025.2  Agenet and bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_177025.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W262, A0A5S9WSZ6, Q8L7Q0
    Conserved Domains (3) summary
    cd04721
    Location:144 → 271
    BAH_plant_1; BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these ...
    cd20403
    Location:455 → 500
    Tudor_Agenet_FMRP-like_rpt2; second Tudor-like Agenet domain found in the fragile X mental retardation protein (FMRP) family
    cd20405
    Location:363 → 421
    Tudor_Agenet_AtDUF_rpt1_3; first and third Tudor-like Agenet domains found in a family of Arabidopsis thaliana DUF724 domain-containing proteins (AtDUFs)

  4. NM_001334372.1 → NP_001321497.1  Agenet and bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AR23, A0A5S9WSZ6

  5. NM_001334369.1 → NP_001319349.1  Agenet and bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A7G2E489, F4HXB8
Nucleotide Protein
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