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Thioesterase superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 843155, updated on 18-Sep-2024

Summary

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Official Full Name
Thioesterase superfamily protein
Primary source
TAIR:AT1G68260
Locus tag
AT1G68260
See related
Araport:AT1G68260
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
acyl-lipid thioesterase 3; ALT3; T22E19.11; T22E19_11
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Genomic context

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Location:
chromosome: 1
Exon count:
5
Sequence:
Chromosome: 1; NC_003070.9 (25585774..25587717, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene basic helix-loop-helix (bHLH) DNA-binding superfamily protein Neighboring gene uncharacterized protein Neighboring gene AMP-dependent synthetase and ligase family protein Neighboring gene Thioesterase superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Acyl-lipid thioesterase1-4 from Arabidopsis thaliana form a novel family of fatty acyl-acyl carrier protein thioesterases with divergent expression patterns and substrate specificities. Pulsifer IP, et al. Plant Mol Biol, 2014 Mar. PMID 24214063
  2. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
  3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Data show that acyl-lipid thioesterase 1-4 ALT1 (At1g35290) and ALT2 (At1g35250) are separated by four genes, while ALT3 (At1g68260) and ALT4 (At1g68280) are separated by a single gene.
    Title: Acyl-lipid thioesterase1-4 from Arabidopsis thaliana form a novel family of fatty acyl-acyl carrier protein thioesterases with divergent expression patterns and substrate specificities.
Submit: New GeneRIF Correction

Pathways from PubChem

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General gene information

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Homology

NM_105497.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables fatty acyl-[ACP] hydrolase activity IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast IDA
Inferred from Direct Assay
more info
 PubMed 
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in mitochondrion HDA PubMed 

General protein information

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Preferred Names
Thioesterase superfamily protein
NP_564926.1
  • Thioesterase superfamily protein; CONTAINS InterPro DOMAIN/s: Thioesterase superfamily (InterPro:IPR006683); BEST Arabidopsis thaliana protein match is: Thioesterase superfamily protein (TAIR:AT1G68280.1); Has 2036 Blast hits to 2035 proteins in 690 species: Archae - 16; Bacteria - 1416; Metazoa - 0; Fungi - 0; Plants - 80; Viruses - 0; Other Eukaryotes - 524 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    25585774..25587717 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_105497.5 → NP_564926.1  Thioesterase superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_564926.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8W583, Q9C9G1
    UniProtKB/TrEMBL
    A0A178W356, A0A5S9WSK7
    Conserved Domains (1) summary
    cd00586
    Location:54 → 164
    4HBT; 4-hydroxybenzoyl-CoA thioesterase (4HBT). Catalyzes the final step in the 4-chlorobenzoate degradation pathway in which 4-chlorobenzoate is converted to 4-hydroxybenzoate in certain soil-dwelling bacteria. 4HBT forms a homotetramer with four active sites. ...
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8W583.1

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