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2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 843136, updated on 18-Sep-2024

Summary

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Official Full Name
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Primary source
TAIR:AT1G68080
Locus tag
AT1G68080
See related
Araport:AT1G68080
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T23K23.7; T23K23_7
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Genomic context

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Location:
chromosome: 1
Exon count:
5
Sequence:
Chromosome: 1; NC_003070.9 (25517411..25519653)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene flavin-binding, kelch repeat, f box 1 Neighboring gene microtubule-associated proteins 70-1 Neighboring gene Zinc finger, C3HC4 type (RING finger) family protein Neighboring gene annexin 5 Neighboring gene ZIP metal ion transporter family Neighboring gene ENTH/ANTH/VHS superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_001084320.2
NM_001084321.2
NM_001334343.1
NM_001334344.1
NM_105478.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables L-ascorbic acid binding IEA
Inferred from Electronic Annotation
more info
  
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
  
enables procollagen-proline 3-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in collagen metabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
NP_001077789.1
  • 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, iron ion binding, L-ascorbic acid binding; INVOLVED IN: oxidation reduction; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prolyl 4-hydroxylase, alpha subunit (InterPro:IPR006620); Has 70 Blast hits to 70 proteins in 19 species: Archae - 0; Bacteria - 2; Metazoa - 14; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).
NP_001077790.1
  • 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, L-ascorbic acid binding, iron ion binding; INVOLVED IN: oxidation reduction; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prolyl 4-hydroxylase, alpha subunit (InterPro:IPR006620); Has 70 Blast hits to 70 proteins in 19 species: Archae - 0; Bacteria - 2; Metazoa - 14; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).
NP_001319341.1
  • 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
NP_176975.2
  • 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, iron ion binding, L-ascorbic acid binding; INVOLVED IN: oxidation reduction; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prolyl 4-hydroxylase, alpha subunit (InterPro:IPR006620); Has 25 Blast hits to 25 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 17; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    25517411..25519653
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001334343.1 → NP_001319341.1  2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WDW4, A0A654EM02, B3H6C9, Q9C9X2

  2. NM_001334344.1 → NP_001322794.1  2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AV42, A0A654EM02
    Conserved Domains (1) summary
    pfam13640
    Location:87 → 149
    2OG-FeII_Oxy_3; 2OG-Fe(II) oxygenase superfamily

  3. NM_105478.4 → NP_176975.2  2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_176975.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654EM02, Q5PP31
    Conserved Domains (1) summary
    pfam13640
    Location:93 → 175
    2OG-FeII_Oxy_3; 2OG-Fe(II) oxygenase superfamily

  4. NM_001084321.2 → NP_001077790.1  2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001077790.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654EM02, Q45GM3
    Conserved Domains (1) summary
    cl21496
    Location:62 → 155
    2OG-FeII_Oxy; 2OG-Fe(II) oxygenase superfamily

  5. NM_001084320.2 → NP_001077789.1  2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001077789.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A7G2E792, A0A7G2E7C0, Q45GM2
    Conserved Domains (1) summary
    pfam13640
    Location:93 → 155
    2OG-FeII_Oxy_3; 2OG-Fe(II) oxygenase superfamily
Nucleotide Protein
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