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FXG1 alpha-fucosidase 1 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 843109, updated on 18-Sep-2024

Summary

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Official Symbol
FXG1
Official Full Name
alpha-fucosidase 1
Primary source
TAIR:AT1G67830
Locus tag
AT1G67830
See related
Araport:AT1G67830
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
alpha-fucosidase 1; Arabidopsis thaliana alpha-fucosidase 1; ATFXG1; F12A21.4; F12A21_4
Summary
Encodes a protein with alpha-fucosidase activity. The activity was assessed on 2'-fucosyl-lactitol. AtFXG1 was able to remove the t-fucosyl residues of XXFG xyloglucan oligosaccharides.
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Genomic context

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See FXG1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
3
Sequence:
Chromosome: 1; NC_003070.9 (25431549..25433091, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene sulfur E2 Neighboring gene Protein phosphatase 2C family protein Neighboring gene chloroplast sensor kinase Neighboring gene lysine ketoglutarate reductase trans-splicing protein (DUF707)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. AtFXG1, an Arabidopsis gene encoding alpha-L-fucosidase active against fucosylated xyloglucan oligosaccharides. de La Torre F, et al. Plant Physiol, 2002 Jan. PMID 11788770, Free PMC Article
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_105451.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables alpha-L-fucosidase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables hydrolase activity, acting on ester bonds IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
alpha-fucosidase 1
NP_176949.1
  • alpha-fucosidase 1 (FXG1); FUNCTIONS IN: alpha-L-fucosidase activity, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT3G26430.1); Has 3145 Blast hits to 3097 proteins in 87 species: Archae - 0; Bacteria - 62; Metazoa - 0; Fungi - 3; Plants - 3080; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    25431549..25433091 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_105451.4 → NP_176949.1  alpha-fucosidase 1 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_176949.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q681W5, Q9FXE5
    UniProtKB/TrEMBL
    A0A178W726
    Conserved Domains (1) summary
    cd01837
    Location:29 → 364
    SGNH_plant_lipase_like; SGNH_plant_lipase_like, a plant specific subfamily of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all ...
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9FXE5.1

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