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Zincin-like metalloproteases family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 843094, updated on 18-Sep-2024

Summary

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Official Full Name
Zincin-like metalloproteases family protein
Primary source
TAIR:AT1G67690
Locus tag
AT1G67690
See related
Araport:AT1G67690
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F12A21.16
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Genomic context

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Location:
chromosome: 1
Exon count:
20
Sequence:
Chromosome: 1; NC_003070.9 (25368874..25373977)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene SRP72 RNA-binding domain-containing protein Neighboring gene multidrug resistance protein Neighboring gene response regulator 11

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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NM_105437.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables metalloendopeptidase activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Zincin-like metalloproteases family protein
NP_564902.4
  • Zincin-like metalloproteases family protein; FUNCTIONS IN: metalloendopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M3A/M3B, thimet/oligopeptidase F (InterPro:IPR001567); BEST Arabidopsis thaliana protein match is: Zincin-like metalloproteases family protein (TAIR:AT5G51540.1); Has 5194 Blast hits to 5176 proteins in 1382 species: Archae - 6; Bacteria - 3154; Metazoa - 337; Fungi - 406; Plants - 147; Viruses - 0; Other Eukaryotes - 1144 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    25368874..25373977
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_105437.5 → NP_564902.4  Zincin-like metalloproteases family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_564902.4

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4HTQ1, Q9FXD5
    UniProtKB/TrEMBL
    A0A178WAB8
    Conserved Domains (2) summary
    cd06455
    Location:71 → 705
    M3A_TOP; Peptidase M3 Thimet oligopeptidase (TOP) also includes neurolysin
    COG0339
    Location:97 → 705
    Dcp; Zn-dependent oligopeptidase [Posttranslational modification, protein turnover, chaperones]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
F4HTQ1.1

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