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Lojap-related protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 843083, updated on 18-Sep-2024

Summary

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Official Full Name
Lojap-related protein
Primary source
TAIR:AT1G67620
Locus tag
AT1G67620
See related
Araport:AT1G67620
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F12B7.17; F12B7_17
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Genomic context

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Location:
chromosome: 1
Exon count:
4
Sequence:
Chromosome: 1; NC_003070.9 (25340353..25342082)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene miscRNA Neighboring gene F-box family protein Neighboring gene pseudo

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. In-depth temporal transcriptome profiling reveals a crucial developmental switch with roles for RNA processing and organelle metabolism that are essential for germination in Arabidopsis. Narsai R, et al. Plant Physiol, 2011 Nov. PMID 21908688, Free PMC Article
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_105428.4

Gene Ontology Provided by TAIR

Component Evidence Code Pubs
located_in mitochondrion HDA PubMed 

General protein information

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Preferred Names
Lojap-related protein
NP_564901.1
  • Lojap-related protein; CONTAINS InterPro DOMAIN/s: Iojap-related protein (InterPro:IPR004394); Has 4659 Blast hits to 4659 proteins in 1794 species: Archae - 0; Bacteria - 3277; Metazoa - 93; Fungi - 0; Plants - 60; Viruses - 0; Other Eukaryotes - 1229 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    25340353..25342082
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_105428.4 → NP_564901.1  Lojap-related protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_564901.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8LGB8, Q9CAF9
    UniProtKB/TrEMBL
    A0A654EXL0
    Conserved Domains (1) summary
    pfam02410
    Location:49 → 148
    RsfS; Ribosomal silencing factor during starvation
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9CAF9.1

Gene LinkOut

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