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emb1688 Minichromosome maintenance (MCM2/3/5) family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 843064, updated on 18-Sep-2024

Summary

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Official Symbol
emb1688
Official Full Name
Minichromosome maintenance (MCM2/3/5) family protein
Primary source
TAIR:AT1G67440
Locus tag
AT1G67440
See related
Araport:AT1G67440
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
embryo defective 1688; T1F15.10; T1F15_10
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Genomic context

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See emb1688 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
5
Sequence:
Chromosome: 1; NC_003070.9 (25263757..25265861, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Zn-dependent exopeptidases superfamily protein Neighboring gene Ribosomal protein L22p/L17e family protein Neighboring gene ncRNA Neighboring gene F-box and associated interaction domains-containing protein Neighboring gene F-box and associated interaction domains-containing protein Neighboring gene Minichromosome maintenance (MCM2/3/5) family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. AtRsgA from Arabidopsis thaliana is important for maturation of the small subunit of the chloroplast ribosome. Janowski M, et al. Plant J, 2018 Oct. PMID 30044525
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_105411.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within chloroplast organization IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within embryo development ending in seed dormancy NAS
Non-traceable Author Statement
more info
  
acts_upstream_of_or_within ribosomal small subunit assembly IGI
Inferred from Genetic Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Minichromosome maintenance (MCM2/3/5) family protein
NP_176911.2
  • embryo defective 1688 (emb1688); FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: embryo development ending in seed dormancy; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), EngC GTPase (InterPro:IPR010914), GTPase EngC (InterPro:IPR004881); BEST Arabidopsis thaliana protein match is: Minichromosome maintenance (MCM2/3/5) family protein (TAIR:AT1G67460.1); Has 5395 Blast hits to 5393 proteins in 2047 species: Archae - 18; Bacteria - 4575; Metazoa - 3; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 734 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    25263757..25265861 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001334297.1 → NP_001322691.1  Minichromosome maintenance (MCM2/3/5) family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W5R1, A0A1P8AUP9, A0A5S9WQ77
    Conserved Domains (1) summary
    PRK12289
    Location:81 → 458
    PRK12289; small ribosomal subunit biogenesis GTPase RsgA

  2. NM_105411.3 → NP_176911.2  Minichromosome maintenance (MCM2/3/5) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_176911.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O64802, Q4V399
    UniProtKB/TrEMBL
    A0A178W5R1
    Conserved Domains (1) summary
    cl26332
    Location:24 → 401
    DUF258; Protein of unknown function, DUF258
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q4V399.1

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