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transmembrane protein, putative (DUF247) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 843035, updated on 18-Sep-2024

Summary

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Official Full Name
transmembrane protein, putative (DUF247)
Primary source
TAIR:AT1G67150
Locus tag
AT1G67150
See related
Araport:AT1G67150
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F5A8.6; F5A8_6
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Genomic context

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Location:
chromosome: 1
Exon count:
4
Sequence:
Chromosome: 1; NC_003070.9 (25122404..25125025)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene F-box/kelch-repeat protein, putative (DUF295) Neighboring gene sarcolemmal membrane-associated protein Neighboring gene zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_001036168.1
NM_001124090.1
NM_105385.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
transmembrane protein, putative (DUF247)
NP_001031245.1
  • Plant protein of unknown function (DUF247); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT2G44930.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_001117562.1
  • Plant protein of unknown function (DUF247); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT1G65985.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
NP_176886.1
  • Plant protein of unknown function (DUF247); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT2G44930.1); Has 1000 Blast hits to 902 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1000; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    25122404..25125025
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001334275.1 → NP_001322099.1  transmembrane protein, putative (DUF247) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WGI1, A0A5S9WQI2, Q9ZW92

  2. NM_105385.3 → NP_176886.1  transmembrane protein, putative (DUF247) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_176886.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WGI1, A0A5S9WQI2, Q9ZW92
    Conserved Domains (1) summary
    pfam03140
    Location:8 → 393
    DUF247; Plant protein of unknown function

  3. NM_001124090.1 → NP_001117562.1  transmembrane protein, putative (DUF247) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001117562.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WGI1, A0A5S9WQI2, B3H7E7
    Conserved Domains (1) summary
    pfam03140
    Location:8 → 350
    DUF247; Plant protein of unknown function

  4. NM_001036168.1 → NP_001031245.1  transmembrane protein, putative (DUF247) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001031245.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WGI1, A0A5S9WQI2, Q6E287
    Conserved Domains (1) summary
    pfam03140
    Location:8 → 397
    DUF247; Plant protein of unknown function
Nucleotide Protein
Heading Accession and Version

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