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senescence-associated family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 842950, updated on 18-Sep-2024

Summary

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Official Full Name
senescence-associated family protein
Primary source
TAIR:AT1G66330
Locus tag
AT1G66330
See related
Araport:AT1G66330
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T27F4.8; T27F4_8
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Genomic context

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Location:
chromosome: 1
Exon count:
14
Sequence:
Chromosome: 1; NC_003070.9 (24729629..24732575, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene F-box/RNI-like/FBD-like domains-containing protein Neighboring gene F-box/RNI-like superfamily protein Neighboring gene Signal transduction histidine kinase, hybrid-type, ethylene sensor Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Ethylene response pathway is essential for ARABIDOPSIS A-FIFTEEN function in floral induction and leaf senescence. Chen GH, et al. Plant Signal Behav, 2012 Apr. PMID 22499170, Free PMC Article
  2. Role of ARABIDOPSIS A-FIFTEEN in regulating leaf senescence involves response to reactive oxygen species and is dependent on ETHYLENE INSENSITIVE2. Chen GH, et al. J Exp Bot, 2012 Jan. PMID 21940719, Free PMC Article
  3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. A functional ethylene response is essential for AAF function in leaf senescence and floral induction.[AAF]
    Title: Ethylene response pathway is essential for ARABIDOPSIS A-FIFTEEN function in floral induction and leaf senescence.
Submit: New GeneRIF Correction

General gene information

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NM_105304.2
NM_202366.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within cellular response to oxidative stress IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within leaf senescence IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within reactive oxygen species metabolic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within vegetative to reproductive phase transition of meristem IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast IDA
Inferred from Direct Assay
more info
 PubMed 
located_in chloroplast ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
senescence-associated family protein
NP_564872.1
  • senescence-associated family protein; Has 54 Blast hits to 54 proteins in 21 species: Archae - 0; Bacteria - 13; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
NP_974095.1
  • senescence-associated family protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    24729629..24732575 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_202366.3 → NP_974095.1  senescence-associated family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_974095.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q5K6K5, Q8LCA3, Q8VZ77, Q9C8Y4
    UniProtKB/TrEMBL
    A0A654ERL7, A0A7G2E0B3

  2. NM_105304.2 → NP_564872.1  senescence-associated family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_564872.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q5K6K5, Q8LCA3, Q8VZ77, Q9C8Y4
    UniProtKB/TrEMBL
    A0A654ERL7, A0A7G2E0B3
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9C8Y4.1

Gene LinkOut

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