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hikeshi-like protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 842922, updated on 18-Sep-2024

Summary

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Official Full Name
hikeshi-like protein
Primary source
TAIR:AT1G66080
Locus tag
AT1G66080
See related
Araport:AT1G66080
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F15E12.12; F15E12_12
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Genomic context

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Location:
chromosome: 1
Exon count:
2
Sequence:
Chromosome: 1; NC_003070.9 (24599939..24601308, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene hypothetical protein (DUF577) Neighboring gene Translation initiation factor eIF3 subunit Neighboring gene Disease resistance protein (TIR-NBS class) Neighboring gene Plant thionin Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Glucose-Regulated HLP1 Acts as a Key Molecule in Governing Thermomemory. Sharma M, et al. Plant Physiol, 2019 Jun. PMID 30890662, Free PMC Article
  2. Functional analysis of the Hikeshi-like protein and its interaction with HSP70 in Arabidopsis. Koizumi S, et al. Biochem Biophys Res Commun, 2014 Jul 18. PMID 24942879
  3. Integrative Analysis from the Epigenome to Translatome Uncovers Patterns of Dominant Nuclear Regulation during Transient Stress. Lee TA, et al. Plant Cell, 2019 Nov. PMID 31519798, Free PMC Article
  4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_105279.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables sequence-specific double-stranded DNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within cellular response to hypoxia HEP PubMed 
acts_upstream_of_or_within heat acclimation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
hikeshi-like protein
NP_176782.1
  • unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF775 (InterPro:IPR008493); Has 285 Blast hits to 283 proteins in 133 species: Archae - 0; Bacteria - 0; Metazoa - 120; Fungi - 88; Plants - 50; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    24599939..24601308 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_105279.5 → NP_176782.1  hikeshi-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_176782.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W730, A0A7G2E4F1, Q9C8D7
    Conserved Domains (1) summary
    pfam05603
    Location:1 → 185
    DUF775; Protein of unknown function (DUF775)
Nucleotide Protein
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