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transmembrane protein, putative (DUF247) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 842911, updated on 18-Sep-2024

Summary

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Official Full Name
transmembrane protein, putative (DUF247)
Primary source
TAIR:AT1G65985
Locus tag
AT1G65985
See related
Araport:AT1G65985
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 1
Exon count:
6
Sequence:
Chromosome: 1; NC_003070.9 (24562398..24568966, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene thioredoxin-dependent peroxidase 2 Neighboring gene thioredoxin-dependent peroxidase 1 Neighboring gene type 2 peroxiredoxin-related / thiol specific antioxidant / mal allergen family protein Neighboring gene hypothetical protein (DUF577)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_148629.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
transmembrane protein, putative (DUF247)
NP_683470.1
  • Plant protein of unknown function (DUF247); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT1G67150.2); Has 989 Blast hits to 918 proteins in 19 species: Archae - 0; Bacteria - 3; Metazoa - 0; Fungi - 0; Plants - 986; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    24562398..24568966 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001334231.1 → NP_001322075.1  transmembrane protein, putative (DUF247) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q8VYN0, Q9SRZ3

  2. NM_148629.3 → NP_683470.1  transmembrane protein, putative (DUF247) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_683470.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q8VYN0, Q9SRZ3
    Conserved Domains (1) summary
    pfam03140
    Location:16 → 427
    DUF247; Plant protein of unknown function
Nucleotide Protein
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