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PHE1 MADS-box transcription factor family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 842841, updated on 18-Sep-2024

Summary

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Official Symbol
PHE1
Official Full Name
MADS-box transcription factor family protein
Primary source
TAIR:AT1G65330
Locus tag
AT1G65330
See related
Araport:AT1G65330
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
AGAMOUS-like 37; AGL37; PHERES1; T8F5.11; T8F5_11
Summary
Type I MADS-box protein, regulated by MEA and FIE, expressed transiently after fertilization in embryo and endosperm.
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Genomic context

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See PHE1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
1
Sequence:
Chromosome: 1; NC_003070.9 (24266257..24267336, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene xyloglucan endotransglucosylase/hydrolase 17 Neighboring gene Cystathionine beta-synthase (CBS) family protein Neighboring gene cytochrome P450, family 96, subfamily A, polypeptide 3 Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The MADS-box transcription factor PHERES1 controls imprinting in the endosperm by binding to domesticated transposons. Batista RA, et al. Elife, 2019 Dec 2. PMID 31789592, Free PMC Article
  2. Control of PHERES1 imprinting in Arabidopsis by direct tandem repeats. Villar CBR, et al. Mol Plant, 2009 Jul. PMID 19825646
  3. Mechanism of PHERES1 imprinting in Arabidopsis. Makarevich G, et al. J Cell Sci, 2008 Mar 15. PMID 18303047
  4. The Arabidopsis thaliana MEDEA Polycomb group protein controls expression of PHERES1 by parental imprinting. Köhler C, et al. Nat Genet, 2005 Jan. PMID 15619622
  5. The Polycomb-group protein MEDEA regulates seed development by controlling expression of the MADS-box gene PHERES1. Köhler C, et al. Genes Dev, 2003 Jun 15. PMID 12815071, Free PMC Article

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. the imprinted Arabidopsis thaliana MADS-box TF PHERES1 (PHE1) is a master regulator of paternally expressed imprinted genes, as well as of non-imprinted key regulators of endosperm development.
    Title: The MADS-box transcription factor PHERES1 controls imprinting in the endosperm by binding to domesticated transposons.
  2. Study shows that PHERES1 is regulated by genomic imprinting, which is likely caused by the presence of repeat sequences in the proximity of the PHERES1 locus.
    Title: Control of PHERES1 imprinting in Arabidopsis by direct tandem repeats.
  3. AtUBP26 is required for normal seed development and the repression of PHE1
    Title: UBIQUITIN-SPECIFIC PROTEASE 26 is required for seed development and the repression of PHERES1 in Arabidopsis.
  4. Evidence that silencing of the maternal PHERES1 allele depends on a distantly located region downstream of the PHERES1 locus.
    Title: Mechanism of PHERES1 imprinting in Arabidopsis.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_105207.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
  
enables cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within embryo development ending in seed dormancy IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  
located_in nucleus ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
located_in nucleus NAS
Non-traceable Author Statement
more info
 PubMed 
located_in pollen tube IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
MADS-box transcription factor family protein
NP_176712.1
  • PHERES1 (PHE1); CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 38 (TAIR:AT1G65300.1); Has 3933 Blast hits to 3931 proteins in 449 species: Archae - 0; Bacteria - 0; Metazoa - 161; Fungi - 84; Plants - 3665; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    24266257..24267336 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_105207.2 → NP_176712.1  MADS-box transcription factor family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_176712.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O80805, Q84JV4, Q84JW5, Q84VN9, Q84VP0, Q84VP1
    UniProtKB/TrEMBL
    A0A178W2S5, A0A5S9WPI0, A0A654EMR7
    Conserved Domains (1) summary
    cd00266
    Location:1 → 84
    MADS_SRF_like; SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in ...
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O80805.1

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