U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Ubiquitin carboxyl-terminal hydrolase-related protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 842827, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Full Name
Ubiquitin carboxyl-terminal hydrolase-related protein
Primary source
TAIR:AT1G65200
Locus tag
AT1G65200
See related
Araport:AT1G65200
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T23K8.11; T23K8_11
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 1
Exon count:
12
Sequence:
Chromosome: 1; NC_003070.9 (24218470..24222794, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Cysteine/Histidine-rich C1 domain family protein Neighboring gene Protein kinase superfamily protein Neighboring gene ncRNA Neighboring gene Galactose-binding protein

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

Go to the top of the page Help
Preferred Names
Ubiquitin carboxyl-terminal hydrolase-related protein
NP_176699.1
  • Ubiquitin carboxyl-terminal hydrolase-related protein; FUNCTIONS IN: ubiquitin thiolesterase activity, zinc ion binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF627 (InterPro:IPR006866), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394), Zinc finger, C2H2-type (InterPro:IPR007087), Protein of unknown function DUF629 (InterPro:IPR006865); BEST Arabidopsis thaliana protein match is: Ubiquitin carboxyl-terminal hydrolase-related protein (TAIR:AT1G65130.1); Has 289 Blast hits to 258 proteins in 49 species: Archae - 0; Bacteria - 10; Metazoa - 28; Fungi - 6; Plants - 224; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    24218470..24222794 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_105193.2 → NP_176699.1  Ubiquitin carboxyl-terminal hydrolase-related protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_176699.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654EML5, F4I9V7
    Conserved Domains (3) summary
    pfam00443
    Location:804 → 1094
    UCH; Ubiquitin carboxyl-terminal hydrolase
    pfam04780
    Location:179 → 639
    DUF629; Protein of unknown function (DUF629)
    pfam04781
    Location:17 → 122
    DUF627; Protein of unknown function (DUF627)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools