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Translation elongation factor EF1B/ribosomal protein S6 family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 842759, updated on 18-Sep-2024

Summary

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Official Full Name
Translation elongation factor EF1B/ribosomal protein S6 family protein
Primary source
TAIR:AT1G64510
Locus tag
AT1G64510
See related
Araport:AT1G64510
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F1N19.8; F1N19_8
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Genomic context

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Location:
chromosome: 1
Exon count:
2
Sequence:
Chromosome: 1; NC_003070.9 (23954800..23956304, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene DEK, chromatin associated protein Neighboring gene Glutaredoxin family protein Neighboring gene regulatory particle non-ATPase 12A Neighboring gene Plant regulator RWP-RK family protein Neighboring gene miscRNA Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. In-depth analysis of the thylakoid membrane proteome of Arabidopsis thaliana chloroplasts: new proteins, new functions, and a plastid proteome database. Friso G, et al. Plant Cell, 2004 Feb. PMID 14729914, Free PMC Article
  2. Proteomic analysis of the 26S proteasome reveals its direct interaction with transit peptides of plastid protein precursors for their degradation. Sako K, et al. J Proteome Res, 2014 Jul 3. PMID 24846764
  3. Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. Bach-Pages M, et al. Biomolecules, 2020 Apr 24. PMID 32344669, Free PMC Article
  4. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article
  5. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

NM_001334165.1
NM_105126.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables mRNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables rRNA binding IEA
Inferred from Electronic Annotation
more info
  
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in translation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in chloroplast HDA PubMed 
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in chloroplast thylakoid membrane HDA PubMed 
located_in nucleus HDA PubMed 
located_in ribosome IEA
Inferred from Electronic Annotation
more info
  
located_in thylakoid HDA PubMed 

General protein information

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Preferred Names
Translation elongation factor EF1B/ribosomal protein S6 family protein
NP_176632.1
  • Translation elongation factor EF1B/ribosomal protein S6 family protein; FUNCTIONS IN: structural constituent of ribosome, rRNA binding; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: thylakoid, chloroplast thylakoid membrane, ribosome, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Translation elongation factor EF1B/ribosomal protein S6 (InterPro:IPR014717), Ribosomal protein S6 (InterPro:IPR000529); Has 1523 Blast hits to 1523 proteins in 532 species: Archae - 0; Bacteria - 1112; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 375 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    23954800..23956304 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_105126.4 → NP_176632.1  Translation elongation factor EF1B/ribosomal protein S6 family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_176632.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8VY91, Q9SGW4
    UniProtKB/TrEMBL
    A0A178WQK9, A0A5S9WPQ8
    Conserved Domains (1) summary
    cd15487
    Location:100 → 201
    bS6_chloro_cyano; 30S ribosomal protein S6 of chloroplasts and cyanobacteria

  2. NM_001334165.1 → NP_001322828.1  Translation elongation factor EF1B/ribosomal protein S6 family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AV66
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8VY91.1

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