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AT hook motif DNA-binding family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 842654, updated on 10-Oct-2024

Summary

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Official Full Name
AT hook motif DNA-binding family protein
Primary source
TAIR:AT1G63480
Locus tag
AT1G63480
See related
Araport:AT1G63480
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
AHL12; AT-hook motif nuclear localized protein 12; F2K11.15; F2K11_15
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Genomic context

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Location:
chromosome: 1
Exon count:
5
Sequence:
Chromosome: 1; NC_003070.9 (23539557..23542233, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene root hair specific 8 Neighboring gene AT hook motif DNA-binding family protein Neighboring gene glutathione peroxidase 8 Neighboring gene transcription factor jumonji (jmjC) domain-containing protein Neighboring gene kinase with tetratricopeptide repeat domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Arabidopsis thaliana AHL family modulates hypocotyl growth redundantly by interacting with each other via the PPC/DUF296 domain. Zhao J, et al. Proc Natl Acad Sci U S A, 2013 Nov 26. PMID 24218605, Free PMC Article
  2. Extensive signal integration by the phytohormone protein network. Altmann M, et al. Nature, 2020 Jul. PMID 32612234
  3. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001334095.1
NM_001334096.1
NM_001334097.1
NM_001334098.1
NM_001334099.1
NM_105027.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables minor groove of adenine-thymine-rich DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
AT hook motif DNA-binding family protein
NP_176537.2
  • AT hook motif DNA-binding family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175), AT hook, DNA-binding motif (InterPro:IPR017956), A.T hook-like (InterPro:IPR020478); BEST Arabidopsis thaliana protein match is: AT hook motif DNA-binding family protein (TAIR:AT1G63470.1); Has 860 Blast hits to 856 proteins in 70 species: Archae - 0; Bacteria - 8; Metazoa - 47; Fungi - 33; Plants - 756; Viruses - 1; Other Eukaryotes - 15 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    23539557..23542233 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001334094.1 → NP_001322503.1  AT hook motif DNA-binding family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8LPN5, Q8VYP4
    UniProtKB/TrEMBL
    A0A654EKP6

  2. NM_105027.4 → NP_176537.2  AT hook motif DNA-binding family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_176537.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8LPN5, Q8VYP4
    UniProtKB/TrEMBL
    A0A654EKP6
    Conserved Domains (1) summary
    pfam03479
    Location:163 → 275
    DUF296; Domain of unknown function (DUF296)

  3. NM_001334095.1 → NP_001322502.1  AT hook motif DNA-binding family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WFI5, A0A1P8AU89

  4. NM_001334097.1 → NP_001322500.1  AT hook motif DNA-binding family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WFI5, A0A1P8AU89

  5. NM_001334096.1 → NP_001322501.1  AT hook motif DNA-binding family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WFI5, A0A1P8AU89

  6. NM_001334099.1 → NP_001322498.1  AT hook motif DNA-binding family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WFI5, A0A1P8AU89

  7. NM_001334098.1 → NP_001322499.1  AT hook motif DNA-binding family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WFI5, A0A1P8AU89
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8LPN5.1

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