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AT hook motif DNA-binding family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 842653, updated on 10-Oct-2024

Summary

Official Full Name
AT hook motif DNA-binding family protein
Primary source
TAIR:AT1G63470
Locus tag
AT1G63470
See related
Araport:AT1G63470
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
AHL5; AT-hook motif nuclear localized protein 5; F2K11.28; F2K11_28
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Genomic context

Location:
chromosome: 1
Exon count:
5
Sequence:
Chromosome: 1; NC_003070.9 (23536466..23539242, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene heavy metal atpase 5 Neighboring gene root hair specific 8 Neighboring gene glutathione peroxidase 8 Neighboring gene AT hook motif DNA-binding family protein Neighboring gene transcription factor jumonji (jmjC) domain-containing protein

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

NM_105026.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables minor groove of adenine-thymine-rich DNA binding IEA
Inferred from Electronic Annotation
more info
 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
 

General protein information

Preferred Names
AT hook motif DNA-binding family protein
NP_176536.2
  • AT hook motif DNA-binding family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175), AT hook, DNA-binding motif (InterPro:IPR017956); BEST Arabidopsis thaliana protein match is: AT hook motif DNA-binding family protein (TAIR:AT1G63480.1); Has 999 Blast hits to 995 proteins in 66 species: Archae - 0; Bacteria - 22; Metazoa - 171; Fungi - 26; Plants - 768; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    23536466..23539242 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_105026.4NP_176536.2  AT hook motif DNA-binding family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_176536.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8GXB3, Q9SH33
    UniProtKB/TrEMBL
    A0A178WHD7, A0A5S9WP92, A0A654EM38
    Conserved Domains (1) summary
    cd11378
    Location:179291
    DUF296; Domain of unknown function found in archaea, bacteria, and plants