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Leucine-rich repeat protein kinase family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 842649, updated on 18-Sep-2024

Summary

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Official Full Name
Leucine-rich repeat protein kinase family protein
Primary source
TAIR:AT1G63430
Locus tag
AT1G63430
See related
Araport:AT1G63430
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F2K11.19; F2K11_19
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Genomic context

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Location:
chromosome: 1
Exon count:
13
Sequence:
Chromosome: 1; NC_003070.9 (23522449..23526832)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene O-glucosyltransferase-like protein (DUF821) Neighboring gene heavy metal atpase 5 Neighboring gene root hair specific 8

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A membrane protein/signaling protein interaction network for Arabidopsis version AMPv2. Lalonde S, et al. Front Physiol, 2010. PMID 21423366, Free PMC Article
  2. An extracellular network of Arabidopsis leucine-rich repeat receptor kinases. Smakowska-Luzan E, et al. Nature, 2018 Jan 18. PMID 29320478, Free PMC Article
  3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001198372.1
NM_001334093.1
NM_105022.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables protein kinase activity IEA
Inferred from Electronic Annotation
more info
  
enables protein serine/threonine kinase activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
Leucine-rich repeat protein kinase family protein
NP_001185301.1
  • Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: leucine-rich repeat transmembrane protein kinase family protein (TAIR:AT5G41180.1).
NP_176532.2
  • Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: leucine-rich repeat transmembrane protein kinase family protein (TAIR:AT5G41180.1); Has 82848 Blast hits to 42885 proteins in 1486 species: Archae - 53; Bacteria - 3071; Metazoa - 10740; Fungi - 681; Plants - 62873; Viruses - 91; Other Eukaryotes - 5339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    23522449..23526832
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_105022.3 → NP_176532.2  Leucine-rich repeat protein kinase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_176532.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    C0LGH8, Q8GY10, Q9SH29
    UniProtKB/TrEMBL
    A0A178W9C9, A0A5S9WRS7
    Conserved Domains (4) summary
    PLN00113
    Location:69 → 656
    PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
    sd00033
    Location:95 → 118
    LRR_RI; leucine-rich repeat [structural motif]
    pfam08263
    Location:24 → 65
    LRRNT_2; Leucine rich repeat N-terminal domain
    cl21453
    Location:366 → 639
    PKc_like; Protein Kinases, catalytic domain

  2. NM_001334093.1 → NP_001321232.1  Leucine-rich repeat protein kinase family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    C0LGH8, Q8GY10, Q9SH29
    UniProtKB/TrEMBL
    A0A178W9C9, A0A5S9WRS7
    Conserved Domains (4) summary
    PLN00113
    Location:69 → 656
    PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
    sd00033
    Location:95 → 118
    LRR_RI; leucine-rich repeat [structural motif]
    pfam08263
    Location:24 → 65
    LRRNT_2; Leucine rich repeat N-terminal domain
    cl21453
    Location:366 → 639
    PKc_like; Protein Kinases, catalytic domain

  3. NM_001198372.1 → NP_001185301.1  Leucine-rich repeat protein kinase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001185301.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4I233
    Conserved Domains (5) summary
    cd00116
    Location:95 → 217
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:95 → 118
    LRR_RI; leucine-rich repeat [structural motif]
    pfam08263
    Location:24 → 65
    LRRNT_2; Leucine rich repeat N-terminal domain
    pfam13855
    Location:117 → 177
    LRR_8; Leucine rich repeat
    cl21453
    Location:374 → 663
    PKc_like; Protein Kinases, catalytic domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
C0LGH8.1

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