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Tetratricopeptide repeat (TPR)-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 842619, updated on 18-Sep-2024

Summary

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Official Full Name
Tetratricopeptide repeat (TPR)-like superfamily protein
Primary source
TAIR:AT1G63150
Locus tag
AT1G63150
See related
Araport:AT1G63150
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F16M19.13; F16M19_13
Summary
Transacting siRNA generating locus.
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Genomic context

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Location:
chromosome: 1
Exon count:
2
Sequence:
Chromosome: 1; NC_003070.9 (23419294..23421714)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene O-methyltransferase family protein Neighboring gene replication factor C 2 Neighboring gene Zinc finger, C3HC4 type (RING finger) family protein Neighboring gene UDP-D-glucose/UDP-D-galactose 4-epimerase 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_001334070.1
NM_104993.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  
located_in chloroplast ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Tetratricopeptide repeat (TPR)-like superfamily protein
NP_564809.1
  • Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G62910.1); Has 64382 Blast hits to 15012 proteins in 312 species: Archae - 5; Bacteria - 60; Metazoa - 1057; Fungi - 1283; Plants - 59548; Viruses - 0; Other Eukaryotes - 2429 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    23419294..23421714
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_104993.2 → NP_564809.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_564809.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9CAM8
    UniProtKB/TrEMBL
    A0A654EKL1
    Conserved Domains (4) summary
    TIGR00756
    Location:119 → 153
    PPR; pentatricopeptide repeat domain (PPR motif)
    sd00004
    Location:295 → 322
    PPR; PPR repeat [structural motif]
    pfam12854
    Location:392 → 425
    PPR_1; PPR repeat
    pfam13041
    Location:361 → 410
    PPR_2; PPR repeat family

  2. NM_001334070.1 → NP_001323422.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9CAM8
    UniProtKB/TrEMBL
    A0A654EKL1
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9CAM8.1

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