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Calcium-binding EF-hand family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 842581, updated on 18-Sep-2024

Summary

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Official Full Name
Calcium-binding EF-hand family protein
Primary source
TAIR:AT1G62820
Locus tag
AT1G62820
See related
Araport:AT1G62820
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F23N19.25; F23N19_25
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Genomic context

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Location:
chromosome: 1
Exon count:
1
Sequence:
Chromosome: 1; NC_003070.9 (23263214..23264399, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Copper amine oxidase family protein Neighboring gene ncRNA Neighboring gene LSD1-like 1 Neighboring gene miscRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Metal binding affinity and structural properties of calmodulin-like protein 14 from Arabidopsis thaliana. Vallone R, et al. Protein Sci, 2016 Aug. PMID 27124620, Free PMC Article
  2. Arabidopsis CML13 and CML14 Have Essential and Overlapping Roles in Plant Development. Symonds K, et al. Plant Cell Physiol, 2024 Feb 15. PMID 37946525
  3. Analysis of the Arabidopsis nuclear proteome and its response to cold stress. Bae MS, et al. Plant J, 2003 Dec. PMID 14617066
  4. A proteomic strategy for global analysis of plant protein complexes. Aryal UK, et al. Plant Cell, 2014 Oct. PMID 25293756, Free PMC Article
  5. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. CML14 binds one Ca2+ ion with micromolar affinity and the presence of 10 mM Mg2+ decreases the Ca2+ affinity by approximately 5-fold [CML14]
    Title: Metal binding affinity and structural properties of calmodulin-like protein 14 from Arabidopsis thaliana.
Submit: New GeneRIF Correction

General gene information

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Homology

NM_104960.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in response to dexamethasone IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol HDA PubMed 
located_in nucleus HDA PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Calcium-binding EF-hand family protein
NP_176470.1
  • Calcium-binding EF-hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: response to cold; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT1G12310.1); Has 16075 Blast hits to 13795 proteins in 1483 species: Archae - 0; Bacteria - 30; Metazoa - 6203; Fungi - 4627; Plants - 3186; Viruses - 0; Other Eukaryotes - 2029 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    23263214..23264399 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_104960.4 → NP_176470.1  Calcium-binding EF-hand family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_176470.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8VZ50
    UniProtKB/TrEMBL
    A0A178WHE1, A0A5S9WNW4, A0A654EM08
    Conserved Domains (1) summary
    PTZ00184
    Location:4 → 148
    PTZ00184; calmodulin; Provisional
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8VZ50.1

Gene LinkOut

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