U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Pentatricopeptide repeat (PPR) superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 842565, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Full Name
Pentatricopeptide repeat (PPR) superfamily protein
Primary source
TAIR:AT1G62680
Locus tag
AT1G62680
See related
Araport:AT1G62680
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F23N19.22; F23N19_22
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 1
Exon count:
2
Sequence:
Chromosome: 1; NC_003070.9 (23207017..23209987, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Glycosyl hydrolases family 32 protein Neighboring gene rna processing factor 2 Neighboring gene uncharacterized protein Neighboring gene pseudo

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help
NM_001334048.1
NM_104945.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  

General protein information

Go to the top of the page Help
Preferred Names
Pentatricopeptide repeat (PPR) superfamily protein
NP_176455.2
  • Pentatricopeptide repeat (PPR) superfamily protein; LOCATED IN: chloroplast; EXPRESSED IN: shoot apex, leaf whorl, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G63130.1); Has 64113 Blast hits to 15255 proteins in 308 species: Archae - 5; Bacteria - 67; Metazoa - 910; Fungi - 1189; Plants - 59601; Viruses - 0; Other Eukaryotes - 2341 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    23207017..23209987 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_104945.3 → NP_176455.2  Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_176455.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q0WVV4, Q3ECK2
    Conserved Domains (4) summary
    TIGR00756
    Location:436 → 470
    PPR; pentatricopeptide repeat domain (PPR motif)
    sd00004
    Location:262 → 289
    PPR; PPR repeat [structural motif]
    pfam12854
    Location:324 → 357
    PPR_1; PPR repeat
    pfam13041
    Location:188 → 237
    PPR_2; PPR repeat family

  2. NM_001334048.1 → NP_001322491.1  Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q0WVV4, Q3ECK2
    Conserved Domains (4) summary
    TIGR00756
    Location:436 → 470
    PPR; pentatricopeptide repeat domain (PPR motif)
    sd00004
    Location:262 → 289
    PPR; PPR repeat [structural motif]
    pfam12854
    Location:324 → 357
    PPR_1; PPR repeat
    pfam13041
    Location:188 → 237
    PPR_2; PPR repeat family
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q3ECK2.2

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools