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pentatricopeptide (PPR) repeat-containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 842556, updated on 18-Sep-2024

Summary

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Official Full Name
pentatricopeptide (PPR) repeat-containing protein
Primary source
TAIR:AT1G62590
Locus tag
AT1G62590
See related
Araport:AT1G62590
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
AtPPR-AC; Pentatricopeptide (PPR) Adenylate cyclase; PPR-AC; T3P18.15; T3P18_15
Summary
Encodes a functional adenylate cyclase.
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Genomic context

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Location:
chromosome: 1
Exon count:
2
Sequence:
Chromosome: 1; NC_003070.9 (23176930..23179248, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene flavin-monooxygenase glucosinolate S-oxygenase 4 Neighboring gene ncRNA Neighboring gene flavin containing monooxygenase FMO GS-OX-like protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Flavin-binding monooxygenase family protein Neighboring gene NAD(P)-binding Rossmann-fold superfamily protein Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Recombinant expression and functional testing of candidate adenylate cyclase domains. Ruzvidzo O, et al. Methods Mol Biol, 2013. PMID 23681569
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_001334041.1
NM_104937.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables adenylate cyclase activity IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
pentatricopeptide (PPR) repeat-containing protein
NP_176447.1
  • pentatricopeptide (PPR) repeat-containing protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G63330.1); Has 66706 Blast hits to 15368 proteins in 309 species: Archae - 3; Bacteria - 71; Metazoa - 1158; Fungi - 1331; Plants - 61521; Viruses - 0; Other Eukaryotes - 2622 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    23176930..23179248 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_104937.3 → NP_176447.1  pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_176447.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8L792, Q9SXD8
    Conserved Domains (4) summary
    TIGR00756
    Location:331 → 365
    PPR; pentatricopeptide repeat domain (PPR motif)
    sd00004
    Location:402 → 429
    PPR; PPR repeat [structural motif]
    pfam12854
    Location:394 → 427
    PPR_1; PPR repeat
    pfam13041
    Location:328 → 376
    PPR_2; PPR repeat family

  2. NM_001334041.1 → NP_001322835.1  pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8L792, Q9SXD8
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SXD8.1

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