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CDS1 CDP-diacylglycerol synthase 1 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 842541, updated on 18-Sep-2024

Summary

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Official Symbol
CDS1
Official Full Name
CDP-diacylglycerol synthase 1
Primary source
TAIR:AT1G62430
Locus tag
AT1G62430
See related
Araport:AT1G62430
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATCDS1; CDP-diacylglycerol synthase 1; F24O1.17; F24O1_17
Summary
Encodes a CDP-diacylglycerol synthase, involved in phospholipid biosynthesis.
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Genomic context

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See CDS1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
12
Sequence:
Chromosome: 1; NC_003070.9 (23105905..23109534, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene DUF506 family protein (DUF506) Neighboring gene leucine-rich repeat/extensin 2 Neighboring gene Immunoglobulin E-set superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Extraplastidial cytidinediphosphate diacylglycerol synthase activity is required for vegetative development in Arabidopsis thaliana. Zhou Y, et al. Plant J, 2013 Sep. PMID 23711240
  2. Complementary DNAs encoding eukaryotic-type cytidine-5'-diphosphate-diacylglycerol synthases of two plant species. Kopka J, et al. Plant Physiol, 1997 Mar. PMID 9085581, Free PMC Article
  3. Two closely related genes of Arabidopsis encode plastidial cytidinediphosphate diacylglycerol synthases essential for photoautotrophic growth. Haselier A, et al. Plant Physiol, 2010 Jul. PMID 20442275, Free PMC Article
  4. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
  5. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

NM_104923.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables phosphatidate cytidylyltransferase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables phosphatidate cytidylyltransferase activity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
enables phosphatidate cytidylyltransferase activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Process Evidence Code Pubs
involved_in CDP-diacylglycerol biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within developmental vegetative growth IGI
Inferred from Genetic Interaction
more info
 PubMed 
acts_upstream_of_or_within phospholipid biosynthetic process TAS
Traceable Author Statement
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IDA
Inferred from Direct Assay
more info
 PubMed 
located_in membrane ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  
located_in nucleus HDA PubMed 

General protein information

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Preferred Names
CDP-diacylglycerol synthase 1
NP_176433.2
  • CDP-diacylglycerol synthase 1 (CDS1); CONTAINS InterPro DOMAIN/s: Phosphatidate cytidylyltransferase (InterPro:IPR000374), Phosphatidate cytidylyltransferase, eukaryota (InterPro:IPR016720); BEST Arabidopsis thaliana protein match is: cytidinediphosphate diacylglycerol synthase 2 (TAIR:AT4G22340.1); Has 7098 Blast hits to 7086 proteins in 2534 species: Archae - 0; Bacteria - 4982; Metazoa - 186; Fungi - 135; Plants - 138; Viruses - 0; Other Eukaryotes - 1657 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    23105905..23109534 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_104923.4 → NP_176433.2  CDP-diacylglycerol synthase 1 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_176433.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O04928, O48808
    UniProtKB/TrEMBL
    A0A178WPS5, A0A5S9WRU3
    Conserved Domains (1) summary
    PLN02594
    Location:83 → 419
    PLN02594; phosphatidate cytidylyltransferase
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O04928.1

Gene LinkOut

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