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Saposin-like aspartyl protease family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 842526, updated on 18-Sep-2024

Summary

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Official Full Name
Saposin-like aspartyl protease family protein
Primary source
TAIR:AT1G62290
Locus tag
AT1G62290
See related
Araport:AT1G62290
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F19K23.21; F19K23_21
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Genomic context

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Location:
chromosome: 1
Exon count:
12
Sequence:
Chromosome: 1; NC_003070.9 (23009885..23013601, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene SLAC1 homologue 1 Neighboring gene WRKY family transcription factor Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome, metabolome and suppressor analysis reveal an essential role for the ubiquitin-proteasome system in seedling chloroplast development. Talloji P, et al. BMC Plant Biol, 2022 Apr 8. PMID 35395773, Free PMC Article
  2. Isolation of intact vacuoles and proteomic analysis of tonoplast from suspension-cultured cells of Arabidopsis thaliana. Shimaoka T, et al. Plant Cell Physiol, 2004 Jun. PMID 15215502
  3. The vegetative vacuole proteome of Arabidopsis thaliana reveals predicted and unexpected proteins. Carter C, et al. Plant Cell, 2004 Dec. PMID 15539469, Free PMC Article
  4. A proteomic strategy for global analysis of plant protein complexes. Aryal UK, et al. Plant Cell, 2014 Oct. PMID 25293756, Free PMC Article
  5. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_001036142.3
NM_001334023.1
NM_001334024.1
NM_001334025.1
NM_001334026.1
NM_104909.5

Gene Ontology Provided by TAIR

Process Evidence Code Pubs
acts_upstream_of_or_within cellular response to light intensity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in lipid metabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  
located_in nucleus HDA PubMed 
located_in plant-type vacuole HDA PubMed 
located_in secretory vesicle HDA PubMed 
located_in vacuole HDA PubMed 

General protein information

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Preferred Names
Saposin-like aspartyl protease family protein
NP_001031219.1
  • Saposin-like aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis, lipid metabolic process; LOCATED IN: vacuole; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, seedling growth, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Saposin-like (InterPro:IPR011001), Peptidase aspartic (InterPro:IPR021109), Peptidase aspartic, catalytic (InterPro:IPR009007), Saposin-like type B, 1 (InterPro:IPR007856), Saposin-like type B, 2 (InterPro:IPR008138), Saposin B (InterPro:IPR008139), Peptidase A1 (InterPro:IPR001461), Peptidase aspartic, active site (InterPro:IPR001969); BEST Arabidopsis thaliana protein match is: aspartic proteinase A1 (TAIR:AT1G11910.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_176419.2
  • Saposin-like aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis, lipid metabolic process; LOCATED IN: vacuole; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, seedling growth, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Saposin-like (InterPro:IPR011001), Peptidase aspartic (InterPro:IPR021109), Peptidase aspartic, catalytic (InterPro:IPR009007), Saposin-like type B, 1 (InterPro:IPR007856), Saposin-like type B, 2 (InterPro:IPR008138), Saposin B (InterPro:IPR008139), Peptidase A1 (InterPro:IPR001461), Peptidase aspartic, active site (InterPro:IPR001969); BEST Arabidopsis thaliana protein match is: aspartic proteinase A1 (TAIR:AT1G11910.1); Has 7282 Blast hits to 5100 proteins in 420 species: Archae - 0; Bacteria - 6; Metazoa - 4064; Fungi - 1685; Plants - 579; Viruses - 0; Other Eukaryotes - 948 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    23009885..23013601 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001036142.3 → NP_001031219.1  Saposin-like aspartyl protease family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001031219.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O04593, Q8VYL3
    UniProtKB/TrEMBL
    A0A5S9WNL7, A0A654EK95
    Conserved Domains (4) summary
    cd06098
    Location:79 → 511
    phytepsin; Phytepsin, a plant homolog of mammalian lysosomal pepsins
    PLN03146
    Location:7 → 143
    PLN03146; aspartyl protease family protein; Provisional
    pfam03489
    Location:322 → 355
    SapB_2; Saposin-like type B, region 2
    pfam05184
    Location:387 → 422
    SapB_1; Saposin-like type B, region 1

  2. NM_001334024.1 → NP_001322880.1  Saposin-like aspartyl protease family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AVE7, A0A654EK95

  3. NM_001334023.1 → NP_001322882.1  Saposin-like aspartyl protease family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AVH3, A0A654EK95

  4. NM_104909.5 → NP_176419.2  Saposin-like aspartyl protease family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_176419.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O04593, Q8VYL3
    UniProtKB/TrEMBL
    A0A5S9WNL7, A0A654EK95
    Conserved Domains (4) summary
    cd06098
    Location:79 → 511
    phytepsin; Phytepsin, a plant homolog of mammalian lysosomal pepsins
    PLN03146
    Location:7 → 143
    PLN03146; aspartyl protease family protein; Provisional
    pfam03489
    Location:322 → 355
    SapB_2; Saposin-like type B, region 2
    pfam05184
    Location:387 → 422
    SapB_1; Saposin-like type B, region 1

  5. NM_001334025.1 → NP_001322879.1  Saposin-like aspartyl protease family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AVA7, A0A654EK95

  6. NM_001334026.1 → NP_001322881.1  Saposin-like aspartyl protease family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AVE7, A0A654EK95
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8VYL3.1

Gene LinkOut

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