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DNA-binding storekeeper protein-related transcriptional regulator [ Arabidopsis thaliana (thale cress) ]

Gene ID: 842470, updated on 18-Sep-2024

Summary

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Official Full Name
DNA-binding storekeeper protein-related transcriptional regulator
Primary source
TAIR:AT1G61730
Locus tag
AT1G61730
See related
Araport:AT1G61730
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T13M11.9; T13M11_9
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Genomic context

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Location:
chromosome: 1
Exon count:
1
Sequence:
Chromosome: 1; NC_003070.9 (22793170..22794714, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Cysteine/Histidine-rich C1 domain family protein Neighboring gene NAD(P)-binding Rossmann-fold superfamily protein Neighboring gene ncRNA Neighboring gene Sulfite exporter TauE/SafE family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. GeBP, the first member of a new gene family in Arabidopsis, encodes a nuclear protein with DNA-binding activity and is regulated by KNAT1. Curaba J, et al. Plant J, 2003 Jan. PMID 12535344
  2. Enhanced Y1H assays for Arabidopsis. Gaudinier A, et al. Nat Methods, 2011 Oct 30. PMID 22037706, Free PMC Article
  3. Transcriptional Regulation of Arabidopsis Polycomb Repressive Complex 2 Coordinates Cell-Type Proliferation and Differentiation. de Lucas M, et al. Plant Cell, 2016 Oct. PMID 27650334, Free PMC Article
  4. Promoter-based integration in plant defense regulation. Li B, et al. Plant Physiol, 2014 Dec. PMID 25352272, Free PMC Article
  5. A DEK domain-containing protein modulates chromatin structure and function in Arabidopsis. Waidmann S, et al. Plant Cell, 2014 Nov. PMID 25387881, Free PMC Article

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_104855.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables transcription cis-regulatory region binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within glucosinolate metabolic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within regulation of DNA-templated transcription TAS
Traceable Author Statement
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleolus HDA PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
DNA-binding storekeeper protein-related transcriptional regulator
NP_564784.1
  • DNA-binding storekeeper protein-related transcriptional regulator; FUNCTIONS IN: transcription regulator activity; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleolus, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF573 (InterPro:IPR007592); BEST Arabidopsis thaliana protein match is: DNA-binding storekeeper protein-related transcriptional regulator (TAIR:AT4G00390.1); Has 9484 Blast hits to 2301 proteins in 293 species: Archae - 12; Bacteria - 1789; Metazoa - 891; Fungi - 666; Plants - 367; Viruses - 44; Other Eukaryotes - 5715 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    22793170..22794714 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_104855.4 → NP_564784.1  DNA-binding storekeeper protein-related transcriptional regulator [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_564784.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    B9DHQ9, Q8LAG8, Q9SYA9
    UniProtKB/TrEMBL
    A0A5S9WNV2
    Conserved Domains (1) summary
    pfam04504
    Location:159 → 244
    DUF573; Protein of unknown function, DUF573
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SYA9.1

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