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serine protease, putative (Protein of unknown function, DUF538) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 842463, updated on 18-Sep-2024

Summary

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Official Full Name
serine protease, putative (Protein of unknown function, DUF538)
Primary source
TAIR:AT1G61667
Locus tag
AT1G61667
See related
Araport:AT1G61667
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 1
Exon count:
2
Sequence:
Chromosome: 1; NC_003070.9 (22767464..22768645)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene basic helix-loop-helix (bHLH) DNA-binding superfamily protein Neighboring gene Lung seven transmembrane receptor family protein Neighboring gene ncRNA Neighboring gene terpene synthase 14

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_104848.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
serine protease, putative (Protein of unknown function, DUF538)
NP_564783.1
  • Protein of unknown function, DUF538; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF538 (InterPro:IPR007493); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF538 (TAIR:AT5G54530.1); Has 441 Blast hits to 441 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 440; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    22767464..22768645
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001333998.1 → NP_001322874.1  serine protease, putative (Protein of unknown function, DUF538) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AVC2, A0A5S9WNE8, Q8LDT1
    Conserved Domains (1) summary
    pfam04398
    Location:61 → 165
    DUF538; Protein of unknown function, DUF538

  2. NM_104848.3 → NP_564783.1  serine protease, putative (Protein of unknown function, DUF538) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_564783.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WEB8, A0A5S9WNE8, Q0WLF7, Q8LDT1
    Conserved Domains (1) summary
    pfam04398
    Location:25 → 129
    DUF538; Protein of unknown function, DUF538
Nucleotide Protein
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