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S-locus lectin protein kinase family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 842449, updated on 18-Sep-2024

Summary

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Official Full Name
S-locus lectin protein kinase family protein
Primary source
TAIR:AT1G61550
Locus tag
AT1G61550
See related
Araport:AT1G61550
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T25B24.10; T25B24_10
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Genomic context

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Location:
chromosome: 1
Exon count:
8
Sequence:
Chromosome: 1; NC_003070.9 (22704198..22707829, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene Galactose oxidase/kelch repeat superfamily protein Neighboring gene miscRNA Neighboring gene uncharacterized protein Neighboring gene Seven transmembrane MLO family protein Neighboring gene uncharacterized protein Neighboring gene ralf-like 8

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A G-type lectin receptor kinase negatively regulates Arabidopsis immunity against root-knot nematodes. Zhou D, et al. Plant Physiol, 2023 Aug 31. PMID 37103588, Free PMC Article
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_104835.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables calmodulin binding ISS
Inferred from Sequence or Structural Similarity
more info
  
enables protein serine/threonine kinase activity ISS
Inferred from Sequence or Structural Similarity
more info
  
Process Evidence Code Pubs
involved_in recognition of pollen IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in endoplasmic reticulum IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
S-locus lectin protein kinase family protein
NP_176349.1
  • S-locus lectin protein kinase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation, recognition of pollen; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell, root; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), PAN-2 domain (InterPro:IPR013227), Apple-like (InterPro:IPR003609), S-locus receptor kinase, C-terminal (InterPro:IPR021820), EGF-like, type 3 (InterPro:IPR000742), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), S-locus glycoprotein (InterPro:IPR000858); BEST Arabidopsis thaliana protein match is: S-locus lectin protein kinase family protein (TAIR:AT1G61490.1); Has 121113 Blast hits to 119449 proteins in 4468 species: Archae - 96; Bacteria - 13448; Metazoa - 44854; Fungi - 10099; Plants - 34551; Viruses - 435; Other Eukaryotes - 17630 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    22704198..22707829 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_104835.3 → NP_176349.1  S-locus lectin protein kinase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_176349.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9SY95
    UniProtKB/TrEMBL
    A0A654EKH9
    Conserved Domains (7) summary
    smart00108
    Location:24 → 141
    B_lectin; Bulb-type mannose-specific lectin
    smart00221
    Location:490 → 760
    STYKc; Protein kinase; unclassified specificity
    cd00028
    Location:24 → 141
    B_lectin; Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically ...
    pfam11883
    Location:761 → 802
    DUF3403; Domain of unknown function (DUF3403)
    cd14066
    Location:495 → 761
    STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs
    pfam00954
    Location:200 → 307
    S_locus_glycop; S-locus glycoprotein domain
    pfam08276
    Location:334 → 394
    PAN_2; PAN-like domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SY95.1

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