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cotton fiber (DUF761) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 842420, updated on 18-Sep-2024

Summary

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Official Full Name
cotton fiber (DUF761)
Primary source
TAIR:AT1G61260
Locus tag
AT1G61260
See related
Araport:AT1G61260
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F11P17.2; F11P17_2
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Genomic context

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Location:
chromosome: 1
Exon count:
2
Sequence:
Chromosome: 1; NC_003070.9 (22593465..22595338, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene secretory carrier 3 Neighboring gene uncharacterized protein Neighboring gene Transmembrane amino acid transporter family protein Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_104807.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
cotton fiber (DUF761)
NP_176321.2
  • Protein of unknown function (DUF761); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF761, plant (InterPro:IPR008480); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF761) (TAIR:AT1G11220.1); Has 110 Blast hits to 108 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 108; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    22593465..22595338 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_104807.3 → NP_176321.2  cotton fiber (DUF761) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_176321.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WI20, A0A5S9WN99, F4HTI9
    Conserved Domains (2) summary
    pfam05553
    Location:307 → 338
    DUF761; Cotton fibre expressed protein
    pfam14364
    Location:40 → 72
    DUF4408; Domain of unknown function (DUF4408)
Nucleotide Protein
Heading Accession and Version

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