U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LisH and RanBPM domains containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 842408, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Full Name
LisH and RanBPM domains containing protein
Primary source
TAIR:AT1G61150
Locus tag
AT1G61150
See related
Araport:AT1G61150
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F11P17.12; F11P17_12
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 1
Exon count:
8
Sequence:
Chromosome: 1; NC_003070.9 (22542402..22545661)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene serine carboxypeptidase-like 32 Neighboring gene SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein Neighboring gene retrotransposon gag Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Interactions of an Arabidopsis RanBPM homologue with LisH-CTLH domain proteins revealed high conservation of CTLH complexes in eukaryotes. Tomaštíková E, et al. BMC Plant Biol, 2012 Jun 7. PMID 22676313, Free PMC Article
  2. Extensive signal integration by the phytohormone protein network. Altmann M, et al. Nature, 2020 Jul. PMID 32612234
  3. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
  4. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  5. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help
NM_001084281.2
NM_001084282.1
NM_001084283.2
NM_001084284.2
NM_001333934.1
NM_001333935.1
NM_001333936.1
NM_001333937.1
NM_104796.5
NM_202332.3
NM_202333.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus HDA PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

Go to the top of the page Help
Preferred Names
LisH and RanBPM domains containing protein
NP_001077750.1
  • LisH and RanBPM domains containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: LisH dimerisation motif, subgroup (InterPro:IPR013720), Ran binding protein, CRA domain (InterPro:IPR019589), CTLH, C-terminal LisH motif (InterPro:IPR006595), LisH dimerisation motif (InterPro:IPR006594), Ran binding protein-like, CRA domain (InterPro:IPR013144); BEST Arabidopsis thaliana protein match is: LisH and RanBPM domains containing protein (TAIR:AT4G09300.1); Has 983 Blast hits to 936 proteins in 195 species: Archae - 2; Bacteria - 0; Metazoa - 453; Fungi - 227; Plants - 227; Viruses - 0; Other Eukaryotes - 74 (source: NCBI BLink).
NP_001077751.1
  • LisH and RanBPM domains containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: LisH dimerisation motif, subgroup (InterPro:IPR013720), Ran binding protein, CRA domain (InterPro:IPR019589), CTLH, C-terminal LisH motif (InterPro:IPR006595), LisH dimerisation motif (InterPro:IPR006594), Ran binding protein-like, CRA domain (InterPro:IPR013144); BEST Arabidopsis thaliana protein match is: LisH and RanBPM domains containing protein (TAIR:AT4G09300.1); Has 982 Blast hits to 935 proteins in 192 species: Archae - 2; Bacteria - 0; Metazoa - 453; Fungi - 226; Plants - 227; Viruses - 0; Other Eukaryotes - 74 (source: NCBI BLink).
NP_001077753.1
  • LisH and RanBPM domains containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ran binding protein, CRA domain (InterPro:IPR019589), CTLH, C-terminal LisH motif (InterPro:IPR006595), Ran binding protein-like, CRA domain (InterPro:IPR013144); BEST Arabidopsis thaliana protein match is: LisH and RanBPM domains containing protein (TAIR:AT4G09300.1); Has 726 Blast hits to 711 proteins in 198 species: Archae - 0; Bacteria - 50; Metazoa - 282; Fungi - 123; Plants - 213; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink).
NP_001319279.1
  • LisH and RanBPM domains containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: LisH dimerisation motif, subgroup (InterPro:IPR013720), Ran binding protein, CRA domain (InterPro:IPR019589), CTLH, C-terminal LisH motif (InterPro:IPR006595), LisH dimerisation motif (InterPro:IPR006594), Ran binding protein-like, CRA domain (InterPro:IPR013144); BEST Arabidopsis thaliana protein match is: LisH and RanBPM domains containing protein (TAIR:AT4G09300.1); Has 983 Blast hits to 936 proteins in 195 species: Archae - 2; Bacteria - 0; Metazoa - 453; Fungi - 227; Plants - 227; Viruses - 0; Other Eukaryotes - 74 (source: NCBI BLink).
NP_176310.3
  • LisH and RanBPM domains containing protein; CONTAINS InterPro DOMAIN/s: LisH dimerisation motif, subgroup (InterPro:IPR013720), Ran binding protein, CRA domain (InterPro:IPR019589), CTLH, C-terminal LisH motif (InterPro:IPR006595), LisH dimerisation motif (InterPro:IPR006594), Ran binding protein-like, CRA domain (InterPro:IPR013144); BEST Arabidopsis thaliana protein match is: LisH and RanBPM domains containing protein (TAIR:AT4G09300.1); Has 1004 Blast hits to 957 proteins in 195 species: Archae - 2; Bacteria - 0; Metazoa - 468; Fungi - 227; Plants - 231; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink).
NP_974061.1
  • LisH and RanBPM domains containing protein; CONTAINS InterPro DOMAIN/s: LisH dimerisation motif, subgroup (InterPro:IPR013720), Ran binding protein, CRA domain (InterPro:IPR019589), CTLH, C-terminal LisH motif (InterPro:IPR006595), LisH dimerisation motif (InterPro:IPR006594), Ran binding protein-like, CRA domain (InterPro:IPR013144); BEST Arabidopsis thaliana protein match is: LisH and RanBPM domains containing protein (TAIR:AT4G09300.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_974062.1
  • LisH and RanBPM domains containing protein; CONTAINS InterPro DOMAIN/s: Ran binding protein, CRA domain (InterPro:IPR019589), CTLH, C-terminal LisH motif (InterPro:IPR006595), Ran binding protein-like, CRA domain (InterPro:IPR013144); BEST Arabidopsis thaliana protein match is: LisH and RanBPM domains containing protein (TAIR:AT4G09300.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    22542402..22545661
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001333936.1 → NP_001319279.1  LisH and RanBPM domains containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A7G2E1Y5

  2. NM_001333937.1 → NP_001322515.1  LisH and RanBPM domains containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A7G2E1Y5

  3. NM_001084281.2 → NP_001077750.1  LisH and RanBPM domains containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001077750.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A7G2E1Y5
    Conserved Domains (4) summary
    smart00668
    Location:61 → 118
    CTLH; C-terminal to LisH motif
    smart00757
    Location:114 → 210
    CRA; CT11-RanBPM
    pfam08513
    Location:25 → 51
    LisH; LisH
    pfam10607
    Location:61 → 205
    CLTH; CTLH/CRA C-terminal to LisH motif domain

  4. NM_104796.5 → NP_176310.3  LisH and RanBPM domains containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_176310.3

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A8MQF1, O22730, Q3E7M2, Q84WK5
    UniProtKB/TrEMBL
    A0A5S9WRG4, A0A654EQ15
    Conserved Domains (2) summary
    pfam08513
    Location:42 → 68
    LisH; LisH
    pfam10607
    Location:78 → 222
    CLTH; CTLH/CRA C-terminal to LisH motif domain

  5. NM_001084283.2 → NP_001077752.1  LisH and RanBPM domains containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001077752.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A7G2E1Y5
    Conserved Domains (4) summary
    smart00668
    Location:61 → 118
    CTLH; C-terminal to LisH motif
    smart00757
    Location:114 → 210
    CRA; CT11-RanBPM
    pfam08513
    Location:25 → 51
    LisH; LisH
    pfam10607
    Location:61 → 205
    CLTH; CTLH/CRA C-terminal to LisH motif domain

  6. NM_001084282.1 → NP_001077751.1  LisH and RanBPM domains containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001077751.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A7G2E1Y5, A8MQN5
    Conserved Domains (4) summary
    smart00668
    Location:55 → 112
    CTLH; C-terminal to LisH motif
    smart00757
    Location:108 → 204
    CRA; CT11-RanBPM
    pfam08513
    Location:19 → 45
    LisH; LisH
    pfam10607
    Location:55 → 199
    CLTH; CTLH/CRA C-terminal to LisH motif domain

  7. NM_202332.3 → NP_974061.1  LisH and RanBPM domains containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_974061.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A7G2E1Y5
    Conserved Domains (4) summary
    smart00668
    Location:61 → 118
    CTLH; C-terminal to LisH motif
    smart00757
    Location:114 → 210
    CRA; CT11-RanBPM
    pfam08513
    Location:25 → 51
    LisH; LisH
    pfam10607
    Location:61 → 205
    CLTH; CTLH/CRA C-terminal to LisH motif domain

  8. NM_001333934.1 → NP_001322514.1  LisH and RanBPM domains containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A8MQF1, O22730, Q3E7M2, Q84WK5
    UniProtKB/TrEMBL
    A0A5S9WRG4, A0A654EQ15
    Conserved Domains (2) summary
    pfam08513
    Location:42 → 68
    LisH; LisH
    pfam10607
    Location:78 → 222
    CLTH; CTLH/CRA C-terminal to LisH motif domain

  9. NM_202333.2 → NP_974062.1  LisH and RanBPM domains containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_974062.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4HTG9
    Conserved Domains (3) summary
    smart00668
    Location:28 → 85
    CTLH; C-terminal to LisH motif
    smart00757
    Location:81 → 177
    CRA; CT11-RanBPM
    pfam10607
    Location:28 → 172
    CLTH; CTLH/CRA C-terminal to LisH motif domain

  10. NM_001084284.2 → NP_001077753.1  LisH and RanBPM domains containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001077753.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4HTG9
    Conserved Domains (3) summary
    smart00668
    Location:28 → 85
    CTLH; C-terminal to LisH motif
    smart00757
    Location:81 → 177
    CRA; CT11-RanBPM
    pfam10607
    Location:28 → 172
    CLTH; CTLH/CRA C-terminal to LisH motif domain

  11. NM_001333935.1 → NP_001322513.1  LisH and RanBPM domains containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A8MQF1, O22730, Q3E7M2, Q84WK5
    UniProtKB/TrEMBL
    A0A5S9WRG4, A0A654EQ15
    Conserved Domains (2) summary
    pfam08513
    Location:42 → 68
    LisH; LisH
    pfam10607
    Location:78 → 222
    CLTH; CTLH/CRA C-terminal to LisH motif domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q84WK5.1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.