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ECHID enoyl-CoA hydratase/isomerase D [ Arabidopsis thaliana (thale cress) ]

Gene ID: 842350, updated on 18-Sep-2024

Summary

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Official Symbol
ECHID
Official Full Name
enoyl-CoA hydratase/isomerase D
Primary source
TAIR:AT1G60550
Locus tag
AT1G60550
See related
Araport:AT1G60550
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
DHNS; enoyl-CoA hydratase/isomerase D; F8A5.9; F8A5_9
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Genomic context

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See ECHID in Genome Data Viewer
Location:
chromosome: 1
Exon count:
9
Sequence:
Chromosome: 1; NC_003070.9 (22305780..22308289, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Dynamin related protein 4A Neighboring gene ncRNA Neighboring gene miscRNA Neighboring gene SWIM zinc finger family protein Neighboring gene Galactose oxidase/kelch repeat superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The proteome map of spinach leaf peroxisomes indicates partial compartmentalization of phylloquinone (vitamin K1) biosynthesis in plant peroxisomes. Babujee L, et al. J Exp Bot, 2010 Mar. PMID 20150517
  2. Inactivation and deficiency of core proteins of photosystems I and II caused by genetical phylloquinone and plastoquinone deficiency but retained lamellar structure in a T-DNA mutant of Arabidopsis. Shimada H, et al. Plant J, 2005 Feb. PMID 15686525
  3. Proteome analysis of Arabidopsis leaf peroxisomes reveals novel targeting peptides, metabolic pathways, and defense mechanisms. Reumann S, et al. Plant Cell, 2007 Oct. PMID 17951448, Free PMC Article
  4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. The role of the gene in the biosynthesis of phylloquinone and plastoquinone for incorporation into the photosynthetic centers of chloroplasts.
    Title: Inactivation and deficiency of core proteins of photosystems I and II caused by genetical phylloquinone and plastoquinone deficiency but retained lamellar structure in a T-DNA mutant of Arabidopsis.
Submit: New GeneRIF Correction

General gene information

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NM_104739.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables 1,4-dihydroxy-2-naphthoyl-CoA synthase activity TAS
Traceable Author Statement
more info
 PubMed 
Process Evidence Code Pubs
involved_in menaquinone biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
involved_in phylloquinone biosynthetic process TAS
Traceable Author Statement
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  
located_in peroxisome HDA PubMed 
located_in peroxisome IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
enoyl-CoA hydratase/isomerase D
NP_176255.2
  • enoyl-CoA hydratase/isomerase D (ECHID); FUNCTIONS IN: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity, catalytic activity; INVOLVED IN: vitamin K biosynthetic process, metabolic process, menaquinone biosynthetic process; LOCATED IN: peroxisome; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Enoyl-CoA hydratase/isomerase, conserved site (InterPro:IPR018376), Naphthoate synthase (InterPro:IPR010198), Crotonase, core (InterPro:IPR001753); BEST Arabidopsis thaliana protein match is: enoyl-CoA hydratase/isomerase A (TAIR:AT4G16210.1); Has 35699 Blast hits to 35688 proteins in 2278 species: Archae - 489; Bacteria - 23573; Metazoa - 1539; Fungi - 813; Plants - 522; Viruses - 0; Other Eukaryotes - 8763 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    22305780..22308289 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_104739.5 → NP_176255.2  enoyl-CoA hydratase/isomerase D [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_176255.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    B3LF97, O22696, Q8GYN9
    UniProtKB/TrEMBL
    A0A5S9WNA7, A0A654EL98
    Conserved Domains (1) summary
    PLN02921
    Location:7 → 337
    PLN02921; naphthoate synthase
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8GYN9.2

Gene LinkOut

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