SNL5 SIN3-like 5 [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Symbol: SNL5
Official Full Name: SIN3-like 5
Primary source: TAIR:AT1G59890
Locus tag: AT1G59890
See related: Araport:AT1G59890
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: F23H11.20; F23H11_20; SIN3-like 5
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Genomic context

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See SNL5 in Genome Data Viewer

Location:: chromosome: 1

Exon count:: 20

Sequence:: Chromosome: 1; NC_003070.9 (22043643..22051114)

Chromosome 1 - NC_003070.9 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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NM_001198338.1

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables transcription corepressor activity	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
part_of Sin3-type complex	IDA Inferred from Direct Assay more info	PubMed
located_in nucleus	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: SIN3-like 5

NP_001185267.1

SIN3-like 5 (SNL5); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Histone deacetylase interacting (InterPro:IPR013194), Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: SIN3-like 6 (TAIR:AT1G10450.1).

NP_001185268.1

SIN3-like 5 (SNL5); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Histone deacetylase interacting (InterPro:IPR013194), Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: SIN3-like 6 (TAIR:AT1G10450.1).

NP_001185269.1

SIN3-like 5 (SNL5); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Histone deacetylase interacting (InterPro:IPR013194), Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: SIN3-like 6 (TAIR:AT1G10450.1).

NP_176197.3

SIN3-like 5 (SNL5); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Histone deacetylase interacting (InterPro:IPR013194), Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: SIN3-like 6 (TAIR:AT1G10450.1); Has 2059 Blast hits to 826 proteins in 195 species: Archae - 0; Bacteria - 5; Metazoa - 811; Fungi - 648; Plants - 432; Viruses - 0; Other Eukaryotes - 163 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003070.9 Reference assembly

Range

22043643..22051114

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_001198339.2 → NP_001185268.1 SIN3-like 5 [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_001185268.1

Status: REVIEWED

UniProtKB/TrEMBL

A0A178WIX5, F4IEM8

Conserved Domains (1) summary

COG5602
Location:45 → 1118

Sin3; Histone deacetylase complex, regulatory component SIN3 [Chromatin structure and dynamics]
NM_104681.6 → NP_176197.3 SIN3-like 5 [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_176197.3

Status: REVIEWED

UniProtKB/Swiss-Prot

F4IEM9, Q9XIE1

UniProtKB/TrEMBL

A0A178WIU2

Conserved Domains (1) summary

COG5602
Location:45 → 1113

Sin3; Histone deacetylase complex, regulatory component SIN3 [Chromatin structure and dynamics]
NM_001198340.2 → NP_001185269.1 SIN3-like 5 [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_001185269.1

Status: REVIEWED

UniProtKB/TrEMBL

A0A5S9WR25, A0A654EJL5, F4IEM7

Conserved Domains (1) summary

COG5602
Location:45 → 1113

Sin3; Histone deacetylase complex, regulatory component SIN3 [Chromatin structure and dynamics]
NM_001198338.1 → NP_001185267.1 SIN3-like 5 [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_001185267.1

Status: REVIEWED

UniProtKB/TrEMBL

A0A178WIU2, F4IEN0

Conserved Domains (4) summary

COG5602
Location:45 → 1109

Sin3; Histone deacetylase complex, regulatory component SIN3 [Chromatin structure and dynamics]

pfam02671
Location:62 → 106

PAH; Paired amphipathic helix repeat

pfam08295
Location:318 → 406

Sin3_corepress; Sin3 family co-repressor

pfam16879
Location:867 → 1111

Sin3a_C; C-terminal domain of Sin3a protein