U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

UBX domain-containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 842246, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Full Name
UBX domain-containing protein
Primary source
TAIR:AT1G59550
Locus tag
AT1G59550
See related
Araport:AT1G59550
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T30E16.10; T30E16_10
Summary
This locus is annotated as a protein-coding gene in TAIR10. Based on communication with Jean-Luc GALLOIS (April 2013), this gene is re-annotated as a UBX domain-containing pseudogene. Note that the Map Detail Image on the locus detial page and in GBrowse will not be updated until after the next genome release.
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 1
Exon count:
3
Sequence:
Chromosome: 1; NC_003070.9 (21879649..21880788, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene basic leucine-zipper 4 Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein Neighboring gene E3 Ubiquitin ligase family protein Neighboring gene tRNA-Ser

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Gene Ontology Provided by TAIR

Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

Go to the top of the page Help
Preferred Names
UBX domain-containing protein
NP_176165.1
  • UBX domain-containing protein; CONTAINS InterPro DOMAIN/s: UBX (InterPro:IPR001012); BEST Arabidopsis thaliana protein match is: structural constituent of ribosome (TAIR:AT4G14250.1); Has 281 Blast hits to 255 proteins in 106 species: Archae - 0; Bacteria - 0; Metazoa - 86; Fungi - 69; Plants - 102; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    21879649..21880788 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_104649.1 → NP_176165.1  UBX domain-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_176165.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9WQY0, A0A654EJY5
    Conserved Domains (3) summary
    cd02958
    Location:78 → 214
    UAS; UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. ...
    cl00155
    Location:229 → 278
    UBQ; Ubiquitin-like proteins
    cl21463
    Location:6 → 44
    UBA_like_SF; UBA domain-like superfamily
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools