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Ribosomal protein S5 family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 842237, updated on 18-Sep-2024

Summary

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Official Full Name
Ribosomal protein S5 family protein
Primary source
TAIR:AT1G59359
Locus tag
AT1G59359
See related
Araport:AT1G59359
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T4M14.3; T4M14_3
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Genomic context

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Location:
chromosome: 1
Exon count:
2
Sequence:
Chromosome: 1; NC_003070.9 (21842190..21843819, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene Inositol-pentakisphosphate 2-kinase family protein Neighboring gene GDSL-like Lipase/Acylhydrolase superfamily protein Neighboring gene B-block-binding subunit of TFIIIC protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Analysis of the Arabidopsis cytosolic ribosome proteome provides detailed insights into its components and their post-translational modification. Carroll AJ, et al. Mol Cell Proteomics, 2008 Feb. PMID 17934214
  2. Isolation and identification of ubiquitin-related proteins from Arabidopsis seedlings. Igawa T, et al. J Exp Bot, 2009. PMID 19429840, Free PMC Article
  3. Arabidopsis cell wall proteome defined using multidimensional protein identification technology. Bayer EM, et al. Proteomics, 2006 Jan. PMID 16287169
  4. In Planta Determination of the mRNA-Binding Proteome of Arabidopsis Etiolated Seedlings. Reichel M, et al. Plant Cell, 2016 Oct. PMID 27729395, Free PMC Article
  5. Isolation and proteomic characterization of the Arabidopsis Golgi defines functional and novel components involved in plant cell wall biosynthesis. Parsons HT, et al. Plant Physiol, 2012 May. PMID 22430844, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_104640.6

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables mRNA binding HDA PubMed 
enables mRNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
involved_in translation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
NOT located_in Golgi apparatus RCA
inferred from Reviewed Computational Analysis
more info
 PubMed 
part_of cytosolic small ribosomal subunit HDA PubMed 
located_in nucleus HDA PubMed 
located_in plant-type cell wall HDA PubMed 
located_in plasmodesma HDA PubMed 

General protein information

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Preferred Names
Ribosomal protein S5 family protein
NP_564740.1
  • Ribosomal protein S5 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cell wall, membrane; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: Ribosomal protein S5, eukaryotic/archaeal (InterPro:IPR005711), Ribosomal protein S5, N-terminal (InterPro:IPR013810), Double-stranded RNA-binding-like (InterPro:IPR014720), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), Ribosomal protein S5, C-terminal (InterPro:IPR005324), Ribosomal protein S5 (InterPro:IPR000851), Ribosomal protein S5 domain 2-type fold, subgroup (InterPro:IPR014721), Ribosomal protein S5, N-terminal, conserved site (InterPro:IPR018192); BEST Arabidopsis thaliana protein match is: Ribosomal protein S5 family protein (TAIR:AT1G58983.1); Has 10014 Blast hits to 9456 proteins in 2909 species: Archae - 262; Bacteria - 5182; Metazoa - 1330; Fungi - 465; Plants - 259; Viruses - 14; Other Eukaryotes - 2502 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    21842190..21843819 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_104640.6 → NP_564740.1  Ribosomal protein S5 family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_564740.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8L861, Q93VB8, Q9SM06
    UniProtKB/TrEMBL
    A0A178W7G7, A0A178W8Q5, A0A384KXC9, A0A654EKY4, B5BRD8, G1JSH2
    Conserved Domains (1) summary
    PTZ00070
    Location:47 → 271
    PTZ00070; 40S ribosomal protein S2; Provisional
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q93VB8.1

Gene LinkOut

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