ZF14 MATE efflux family protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Symbol: ZF14
Official Full Name: MATE efflux family protein
Primary source: TAIR:AT1G58340
Locus tag: AT1G58340
See related: Araport:AT1G58340
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: BCD1; BUSH-AND-CHLOROTIC-DWARF 1; F19C14.5; F19C14_5; ZRIZI; ZRZ
Summary: Encodes a plant MATE (multidrug and toxic compound extrusion) transporter that is localized to the Golgi complex and small organelles and is involved in determining the rate of organ initiation. It is also involved in iron homeostasis when plants are under osmotic stress.
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Genomic context

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See ZF14 in Genome Data Viewer

Location:: chromosome: 1

Exon count:: 2

Sequence:: Chromosome: 1; NC_003070.9 (21652988..21655439)

Chromosome 1 - NC_003070.9 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

we show that a MATE (multidrug and toxic compound extrusion) transporter, designated BCD1 (BUSH-AND-CHLOROTIC-DWARF 1), contributes to iron homoeostasis during stress responses and senescence in Arabidopsis.[BCD1]
Title: A Golgi-localized MATE transporter mediates iron homoeostasis under osmotic stress in Arabidopsis.
These results suggest that ZRZ is involved in communicating a leaf-borne signal that determines the rate of organ initiation. [ZRZ] [ZRIZI]
Title: From organelle to organ: ZRIZI MATE-Type transporter is an organelle transporter that enhances organ initiation.

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Homology

Orthologs from OrthoDB

NM_104614.5

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables antiporter activity	IEA Inferred from Electronic Annotation more info
enables iron ion transmembrane transporter activity	IGI Inferred from Genetic Interaction more info	PubMed
enables xenobiotic transmembrane transporter activity	IMP Inferred from Mutant Phenotype more info	PubMed

Process	Evidence Code	Pubs
acts_upstream_of_or_within iron ion transport	IGI Inferred from Genetic Interaction more info	PubMed
acts_upstream_of_or_within multicellular organismal-level iron ion homeostasis	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within regulation of plant organ formation	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in response to abscisic acid	IEP Inferred from Expression Pattern more info	PubMed
involved_in response to absence of light	IEP Inferred from Expression Pattern more info	PubMed
involved_in response to heat	IEP Inferred from Expression Pattern more info	PubMed
acts_upstream_of_or_within response to nematode	HEP more info	PubMed
involved_in response to osmotic stress	IEP Inferred from Expression Pattern more info	PubMed
involved_in root morphogenesis	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in xenobiotic detoxification by transmembrane export across the plasma membrane	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in Golgi apparatus	IDA Inferred from Direct Assay more info	PubMed
part_of Golgi transport complex	IDA Inferred from Direct Assay more info	PubMed
located_in chloroplast	ISM Inferred from Sequence Model more info
located_in intracellular organelle	IDA Inferred from Direct Assay more info	PubMed
located_in late endosome	IDA Inferred from Direct Assay more info	PubMed

General protein information

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Preferred Names: MATE efflux family protein

NP_564731.1

ZF14; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: response to nematode; LOCATED IN: membrane; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT4G29140.1); Has 10543 Blast hits to 10463 proteins in 2002 species: Archae - 229; Bacteria - 7598; Metazoa - 148; Fungi - 324; Plants - 1321; Viruses - 0; Other Eukaryotes - 923 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003070.9 Reference assembly

Range

21652988..21655439

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_104614.5 → NP_564731.1 MATE efflux family protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_564731.1

Status: REVIEWED

UniProtKB/Swiss-Prot

Q67YZ2, Q9SLV0

UniProtKB/TrEMBL

A0A5S9WQS4, A0A654EJA8

Conserved Domains (1) summary

cd13132
Location:58 → 494

MATE_eukaryotic; Eukaryotic members of the multidrug and toxic compound extrusion (MATE) family