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Pseudouridine synthase family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 842088, updated on 18-Sep-2024

Summary

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Official Full Name
Pseudouridine synthase family protein
Primary source
TAIR:AT1G56345
Locus tag
AT1G56345
See related
Araport:AT1G56345
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F14G9.4; F14G9_4
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Genomic context

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Location:
chromosome: 1
Exon count:
2
Sequence:
Chromosome: 1; NC_003070.9 (21092993..21094518, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene secretion-associated RAS 1B Neighboring gene calreticulin 1a Neighboring gene Peptide chain release factor 2 Neighboring gene purple acid phosphatase 6

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome-Wide Identification and Expression Analysis of Pseudouridine Synthase Family in Arabidopsis and Maize. Xie Y, et al. Int J Mol Sci, 2022 Feb 28. PMID 35269820, Free PMC Article
  2. Mutations in SUPPRESSOR OF VARIEGATION1, a factor required for normal chloroplast translation, suppress var2-mediated leaf variegation in Arabidopsis. Yu F, et al. Plant Cell, 2008 Jul. PMID 18599582, Free PMC Article
  3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_001333778.1
NM_104514.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables pseudouridine synthase activity TAS
Traceable Author Statement
more info
 PubMed 
Process Evidence Code Pubs
involved_in pseudouridine synthesis IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in chloroplast IDA
Inferred from Direct Assay
more info
 PubMed 
located_in chloroplast ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Pseudouridine synthase family protein
NP_176031.2
  • Pseudouridine synthase family protein; FUNCTIONS IN: pseudouridine synthase activity; INVOLVED IN: pseudouridine synthesis, RNA modification; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pseudouridine synthase, catalytic domain (InterPro:IPR020103), Pseudouridine synthase, RsuA and RluB/C/D/E/F (InterPro:IPR006145), Pseudouridine synthase, RluC/RluD, conserved site (InterPro:IPR006224); Has 16985 Blast hits to 16836 proteins in 2654 species: Archae - 12; Bacteria - 12887; Metazoa - 225; Fungi - 200; Plants - 183; Viruses - 0; Other Eukaryotes - 3478 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    21092993..21094518 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_104514.3 → NP_176031.2  Pseudouridine synthase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_176031.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q7XA65, Q9C7K8, Q9C7Y0
    UniProtKB/TrEMBL
    A0A178W7M0, A0A5S9WQ93, A0A654EUR2
    Conserved Domains (1) summary
    COG0564
    Location:74 → 316
    RluA; Pseudouridylate synthase, 23S rRNA- or tRNA-specific [Translation, ribosomal structure and biogenesis]

  2. NM_001333778.1 → NP_001322451.1  Pseudouridine synthase family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AU32
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q7XA65.1

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