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PP2-B14 phloem protein 2-B14 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 842078, updated on 18-Sep-2024

Summary

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Official Symbol
PP2-B14
Official Full Name
phloem protein 2-B14
Primary source
TAIR:AT1G56250
Locus tag
AT1G56250
See related
Araport:AT1G56250
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
AtPP2-B14; F14G9.14; F14G9_14; phloem protein 2-B14; VBF; VIP1-binding F-box protein
Summary
Encodes an F-box protein that can functionally replace VirF, regulating levels of the VirE2 and VIP1 proteins via a VBF-containing SCF complex. It is thought to be involved in DNA integration and T-DNA degradation.
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Genomic context

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See PP2-B14 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
3
Sequence:
Chromosome: 1; NC_003070.9 (21061522..21063047, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene phloem protein 2-B13 Neighboring gene ncRNA Neighboring gene telomere-capping, CST complex subunit Neighboring gene RPB1a

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Agrobacterium induces expression of a host F-box protein required for tumorigenicity. Zaltsman A, et al. Cell Host Microbe, 2010 Mar 18. PMID 20227663, Free PMC Article
  2. Diversity of the superfamily of phloem lectins (phloem protein 2) in angiosperms. Dinant S, et al. Plant Physiol, 2003 Jan. PMID 12529520, Free PMC Article
  3. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_104504.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables carbohydrate binding ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in cytoplasm IPI
Inferred from Physical Interaction
more info
 PubMed 
located_in nucleus IPI
Inferred from Physical Interaction
more info
 PubMed 

General protein information

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Preferred Names
phloem protein 2-B14
NP_176021.1
  • phloem protein 2-B14 (PP2-B14); FUNCTIONS IN: carbohydrate binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: phloem protein 2-B13 (TAIR:AT1G56240.1); Has 533 Blast hits to 518 proteins in 36 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 533; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    21061522..21063047 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_104504.3 → NP_176021.1  phloem protein 2-B14 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_176021.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9C7K0
    UniProtKB/TrEMBL
    A0A654EUQ4
    Conserved Domains (1) summary
    pfam14299
    Location:94 → 280
    PP2; Phloem protein 2
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9C7K0.1

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