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CBS domain-containing protein / transporter associated domain-containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 842044, updated on 18-Sep-2024

Summary

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Official Full Name
CBS domain-containing protein / transporter associated domain-containing protein
Primary source
TAIR:AT1G55930
Locus tag
AT1G55930
See related
Araport:AT1G55930
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F14J16.20; F14J16_20
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Genomic context

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Location:
chromosome: 1
Exon count:
13
Sequence:
Chromosome: 1; NC_003070.9 (20918683..20922786)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene serine acetyltransferase 2;1 Neighboring gene nuclear speckle splicing regulatory-like protein (DUF2040) Neighboring gene cytochrome P450 family protein Neighboring gene uncharacterized protein Neighboring gene F-box/associated interaction domain protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Two magnesium transporters in the chloroplast inner envelope essential for thylakoid biogenesis in Arabidopsis. Zhang B, et al. New Phytol, 2022 Oct. PMID 35776059
  2. AT_CHLORO, a comprehensive chloroplast proteome database with subplastidial localization and curated information on envelope proteins. Ferro M, et al. Mol Cell Proteomics, 2010 Jun. PMID 20061580, Free PMC Article
  3. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article
  4. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
  5. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_104471.6

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables flavin adenine dinucleotide binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within magnesium ion transport IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in chloroplast envelope HDA PubMed 
located_in chloroplast inner membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus HDA PubMed 
located_in plastid HDA PubMed 

General protein information

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Preferred Names
CBS domain-containing protein / transporter associated domain-containing protein
NP_175989.2
  • CBS domain-containing protein / transporter associated domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF21 (InterPro:IPR002550), Transporter-associated domain (InterPro:IPR005170), Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: CBS domain-containing protein / transporter associated domain-containing protein (TAIR:AT3G13070.1); Has 15725 Blast hits to 15720 proteins in 2584 species: Archae - 144; Bacteria - 11495; Metazoa - 247; Fungi - 139; Plants - 193; Viruses - 0; Other Eukaryotes - 3507 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    20918683..20922786
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001333747.1 → NP_001321525.1  CBS domain-containing protein / transporter associated domain-containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AR56, A0A5S9WQ44

  2. NM_104471.6 → NP_175989.2  CBS domain-containing protein / transporter associated domain-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_175989.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4I3H6, Q84R21, Q9LG18
    UniProtKB/TrEMBL
    A0A5S9WQ44, A0A654EIW3
    Conserved Domains (1) summary
    COG1253
    Location:156 → 601
    TlyC; Hemolysin or related protein, contains CBS domains [General function prediction only]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q84R21.2

Gene LinkOut

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