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coiled-coil protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 842033, updated on 18-Sep-2024

Summary

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Official Full Name
coiled-coil protein
Primary source
TAIR:AT1G55830
Locus tag
AT1G55830
See related
Araport:AT1G55830
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F20N2.20
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Genomic context

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Location:
chromosome: 1
Exon count:
6
Sequence:
Chromosome: 1; NC_003070.9 (20867559..20870338, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ferredoxin-fold anticodon-binding domain protein Neighboring gene BolA-like family protein Neighboring gene uridine kinase-like 3 Neighboring gene lysine-specific demethylase, putative (DUF1296) Neighboring gene Sec14p-like phosphatidylinositol transfer family protein Neighboring gene cellulose synthase like E1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. CCDC22 and CCDC93, two potential retriever-interacting proteins, are required for root and root hair growth in Arabidopsis. Lewis CD, et al. Front Plant Sci, 2022. PMID 36618652, Free PMC Article
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_001333738.1
NM_104460.3

Gene Ontology Provided by TAIR

Component Evidence Code Pubs
located_in cytoplasm IDA
Inferred from Direct Assay
more info
 PubMed 
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
coiled-coil protein
NP_001185244.1
  • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF812 (InterPro:IPR008530).
NP_175979.2
  • unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF812 (InterPro:IPR008530); Has 10940 Blast hits to 7289 proteins in 653 species: Archae - 228; Bacteria - 791; Metazoa - 6174; Fungi - 805; Plants - 342; Viruses - 19; Other Eukaryotes - 2581 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    20867559..20870338 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001198315.2 → NP_001185244.1  coiled-coil protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001185244.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WJZ6, F4I1X8, Q9LFZ1
    Conserved Domains (1) summary
    pfam05667
    Location:1 → 463
    DUF812; Protein of unknown function (DUF812)

  2. NM_104460.3 → NP_175979.2  coiled-coil protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_175979.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4I1X9
    Conserved Domains (1) summary
    pfam05667
    Location:149 → 382
    DUF812; Protein of unknown function (DUF812)

  3. NM_001333738.1 → NP_001322454.1  coiled-coil protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AU40
Nucleotide Protein
Heading Accession and Version

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